Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C5J entry

There are 2 chains in PDB entry 9C5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLN 266
B
 LYS 5GLN 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9C5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
71 86Right-handed alpha
Helix 4
AA4
A
108 120Right-handed alpha
Helix 5
AA5
A
120 138Right-handed alpha
Helix 6
AA6
A
147 151Right-handed 310
Helix 7
AA7
A
157 178Right-handed alpha
Helix 8
AA8
A
195 210Right-handed alpha
Helix 9
AA9
A
213 226Right-handed alpha
Helix 10
AB1
A
233 246Right-handed alpha
Helix 11
AB2
A
247 250Right-handed 310
Helix 12
AB3
B
22 33Right-handed alpha
Helix 13
AB4
B
47 56Right-handed alpha
Helix 14
AB5
B
57 59Right-handed 310
Helix 15
AB6
B
71 86Right-handed alpha
Helix 16
AB7
B
108 120Right-handed alpha
Helix 17
AB8
B
120 138Right-handed alpha
Helix 18
AB9
B
147 151Right-handed 310
Helix 19
AC1
B
157 178Right-handed alpha
Helix 20
AC2
B
219 226Right-handed alpha
Helix 21
AC3
B
233 246Right-handed alpha
Helix 22
AC4
B
247 252Right-handed 310
Helix 23
AC5
B
262 266Right-handed 310
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There are 2 sheets in PDB entry 9C5J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
36 40parallel
Strand 3
A
12 15parallel
Strand 4
A
91 94parallel
Strand 5
A
140 145parallel
Strand 6
A
183 190parallel
Strand 7
A
256 259parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
12 15parallel
Strand 3
B
91 94parallel
Strand 4
B
140 145parallel
Strand 5
B
183 190parallel
Strand 6
B
256 259parallel
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