Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C5M entry

There are 3 chains in PDB entry 9C5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	GLN 266
B	SER 2	GLN 266
C	GLU 4	GLY 140

There are 96 helices in PDB entry 9C5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	33	Right-handed alpha
Helix 2	AA2	A	47	57	Right-handed alpha
Helix 3	AA3	A	71	86	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	108	120	Right-handed alpha
Helix 6	AA6	A	120	138	Right-handed alpha
Helix 7	AA7	A	147	151	Right-handed 310
Helix 8	AA8	A	157	178	Right-handed alpha
Helix 9	AA9	A	195	210	Right-handed alpha
Helix 10	AB1	A	213	226	Right-handed alpha
Helix 11	AB2	A	233	246	Right-handed alpha
Helix 12	AB3	A	247	250	Right-handed 310
Helix 13	AB4	B	20	33	Right-handed alpha
Helix 14	AB5	B	47	57	Right-handed alpha
Helix 15	AB6	B	71	86	Right-handed alpha
Helix 16	AB7	B	103	107	Right-handed 310
Helix 17	AB8	B	108	120	Right-handed alpha
Helix 18	AB9	B	120	138	Right-handed alpha
Helix 19	AC1	B	147	151	Right-handed 310
Helix 20	AC2	B	157	178	Right-handed alpha
Helix 21	AC3	B	195	210	Right-handed alpha
Helix 22	AC4	B	213	226	Right-handed alpha
Helix 23	AC5	B	233	246	Right-handed alpha
Helix 24	AC6	B	247	250	Right-handed 310
Helix 25	AC7	C	20	33	Right-handed alpha
Helix 26	AC8	C	47	57	Right-handed alpha
Helix 27	AC9	C	71	86	Right-handed alpha
Helix 28	AD1	C	103	107	Right-handed 310
Helix 29	AD2	C	108	120	Right-handed alpha
Helix 30	AD3	C	120	138	Right-handed alpha
Helix 31	AD4	C	147	151	Right-handed 310
Helix 32	AD5	C	157	178	Right-handed alpha
Helix 33	AD6	C	195	210	Right-handed alpha
Helix 34	AD7	C	213	226	Right-handed alpha
Helix 35	AD8	C	233	246	Right-handed alpha
Helix 36	AD9	C	247	250	Right-handed 310
Helix 37	AE1	D	20	33	Right-handed alpha
Helix 38	AE2	D	47	57	Right-handed alpha
Helix 39	AE3	D	71	86	Right-handed alpha
Helix 40	AE4	D	103	107	Right-handed 310
Helix 41	AE5	D	108	120	Right-handed alpha
Helix 42	AE6	D	120	138	Right-handed alpha
Helix 43	AE7	D	147	151	Right-handed 310
Helix 44	AE8	D	157	178	Right-handed alpha
Helix 45	AE9	D	195	210	Right-handed alpha
Helix 46	AF1	D	213	226	Right-handed alpha
Helix 47	AF2	D	233	246	Right-handed alpha
Helix 48	AF3	D	247	250	Right-handed 310
Helix 49	AF4	E	20	33	Right-handed alpha
Helix 50	AF5	E	47	57	Right-handed alpha
Helix 51	AF6	E	71	86	Right-handed alpha
Helix 52	AF7	E	103	107	Right-handed 310
Helix 53	AF8	E	108	120	Right-handed alpha
Helix 54	AF9	E	120	138	Right-handed alpha
Helix 55	AG1	E	147	151	Right-handed 310
Helix 56	AG2	E	157	178	Right-handed alpha
Helix 57	AG3	E	195	210	Right-handed alpha
Helix 58	AG4	E	213	226	Right-handed alpha
Helix 59	AG5	E	233	246	Right-handed alpha
Helix 60	AG6	E	247	250	Right-handed 310
Helix 61	AG7	F	20	33	Right-handed alpha
Helix 62	AG8	F	47	57	Right-handed alpha
Helix 63	AG9	F	71	86	Right-handed alpha
Helix 64	AH1	F	103	107	Right-handed 310
Helix 65	AH2	F	108	120	Right-handed alpha
Helix 66	AH3	F	120	138	Right-handed alpha
Helix 67	AH4	F	147	151	Right-handed 310
Helix 68	AH5	F	157	178	Right-handed alpha
Helix 69	AH6	F	195	210	Right-handed alpha
Helix 70	AH7	F	213	226	Right-handed alpha
Helix 71	AH8	F	233	246	Right-handed alpha
Helix 72	AH9	F	247	250	Right-handed 310
Helix 73	AI1	G	20	33	Right-handed alpha
Helix 74	AI2	G	47	57	Right-handed alpha
Helix 75	AI3	G	71	86	Right-handed alpha
Helix 76	AI4	G	103	107	Right-handed 310
Helix 77	AI5	G	108	120	Right-handed alpha
Helix 78	AI6	G	120	138	Right-handed alpha
Helix 79	AI7	G	147	151	Right-handed 310
Helix 80	AI8	G	157	178	Right-handed alpha
Helix 81	AI9	G	195	210	Right-handed alpha
Helix 82	AJ1	G	213	226	Right-handed alpha
Helix 83	AJ2	G	233	246	Right-handed alpha
Helix 84	AJ3	G	247	250	Right-handed 310
Helix 85	AJ4	H	20	33	Right-handed alpha
Helix 86	AJ5	H	47	57	Right-handed alpha
Helix 87	AJ6	H	71	86	Right-handed alpha
Helix 88	AJ7	H	103	107	Right-handed 310
Helix 89	AJ8	H	108	120	Right-handed alpha
Helix 90	AJ9	H	120	138	Right-handed alpha
Helix 91	AK1	H	147	151	Right-handed 310
Helix 92	AK2	H	157	178	Right-handed alpha
Helix 93	AK3	H	195	210	Right-handed alpha
Helix 94	AK4	H	213	226	Right-handed alpha
Helix 95	AK5	H	233	246	Right-handed alpha
Helix 96	AK6	H	247	250	Right-handed 310

There are 8 sheets in PDB entry 9C5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	36	39	parallel
Strand 3	A	12	15	parallel
Strand 4	A	91	94	parallel
Strand 5	A	140	145	parallel
Strand 6	A	183	190	parallel
Strand 7	A	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	36	41	parallel
Strand 3	B	12	15	parallel
Strand 4	B	91	94	parallel
Strand 5	B	140	145	parallel
Strand 6	B	183	190	parallel
Strand 7	B	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	36	41	parallel
Strand 3	C	12	15	parallel
Strand 4	C	91	94	parallel
Strand 5	C	140	145	parallel
Strand 6	C	183	190	parallel
Strand 7	C	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	66	first strand
Strand 2	D	36	41	parallel
Strand 3	D	12	15	parallel
Strand 4	D	91	94	parallel
Strand 5	D	140	145	parallel
Strand 6	D	183	190	parallel
Strand 7	D	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	66	first strand
Strand 2	E	36	41	parallel
Strand 3	E	12	15	parallel
Strand 4	E	91	94	parallel
Strand 5	E	140	145	parallel
Strand 6	E	183	190	parallel
Strand 7	E	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	66	first strand
Strand 2	F	36	41	parallel
Strand 3	F	12	15	parallel
Strand 4	F	91	94	parallel
Strand 5	F	140	145	parallel
Strand 6	F	183	190	parallel
Strand 7	F	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	66	first strand
Strand 2	G	36	41	parallel
Strand 3	G	12	15	parallel
Strand 4	G	91	94	parallel
Strand 5	G	140	145	parallel
Strand 6	G	183	190	parallel
Strand 7	G	256	259	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	36	39	parallel
Strand 3	H	12	15	parallel
Strand 4	H	91	94	parallel
Strand 5	H	140	145	parallel
Strand 6	H	183	190	parallel
Strand 7	H	256	259	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5M