Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C5Q entry

There are 4 chains in PDB entry 9C5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 T 1 G 14
C
 LYS 68LEU 891
B
 T 1 G 14
A
 LYS 68LEU 891
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9C5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
70 75Right-handed 310
Helix 2
AA2
C
77 88Right-handed alpha
Helix 3
AA3
C
93 101Right-handed alpha
Helix 4
AA4
C
121 136Right-handed alpha
Helix 5
AA5
C
146 161Right-handed alpha
Helix 6
AA6
C
191 204Right-handed alpha
Helix 7
AA7
C
206 208Right-handed 310
Helix 8
AA8
C
217 222Right-handed 310
Helix 9
AA9
C
228 243Right-handed alpha
Helix 10
AB1
C
270 279Right-handed alpha
Helix 11
AB2
C
325 336Right-handed alpha
Helix 12
AB3
C
346 364Right-handed alpha
Helix 13
AB4
C
384 396Right-handed alpha
Helix 14
AB5
C
421 434Right-handed alpha
Helix 15
AB6
C
444 448Right-handed 310
Helix 16
AB7
C
470 479Right-handed alpha
Helix 17
AB8
C
501 509Right-handed alpha
Helix 18
AB9
C
528 540Right-handed alpha
Helix 19
AC1
C
546 554Right-handed alpha
Helix 20
AC2
C
558 563Right-handed alpha
Helix 21
AC3
C
581 589Right-handed alpha
Helix 22
AC4
C
612 622Right-handed alpha
Helix 23
AC5
C
627 639Right-handed alpha
Helix 24
AC6
C
648 653Right-handed alpha
Helix 25
AC7
C
665 675Right-handed alpha
Helix 26
AC8
C
677 688Right-handed alpha
Helix 27
AC9
C
690 697Right-handed alpha
Helix 28
AD1
C
707 730Right-handed alpha
Helix 29
AD2
C
733 741Right-handed alpha
Helix 30
AD3
C
744 770Right-handed alpha
Helix 31
AD4
C
772 781Right-handed alpha
Helix 32
AD5
C
781 786Right-handed alpha
Helix 33
AD6
C
792 797Right-handed alpha
Helix 34
AD7
C
803 814Right-handed alpha
Helix 35
AD8
C
826 835Right-handed alpha
Helix 36
AD9
C
849 858Right-handed alpha
Helix 37
AE1
C
871 891Right-handed alpha
Helix 38
AE2
A
70 75Right-handed 310
Helix 39
AE3
A
77 88Right-handed alpha
Helix 40
AE4
A
93 101Right-handed alpha
Helix 41
AE5
A
121 136Right-handed alpha
Helix 42
AE6
A
146 161Right-handed alpha
Helix 43
AE7
A
191 204Right-handed alpha
Helix 44
AE8
A
206 208Right-handed 310
Helix 45
AE9
A
217 222Right-handed 310
Helix 46
AF1
A
228 243Right-handed alpha
Helix 47
AF2
A
270 279Right-handed alpha
Helix 48
AF3
A
325 336Right-handed alpha
Helix 49
AF4
A
346 364Right-handed alpha
Helix 50
AF5
A
384 396Right-handed alpha
Helix 51
AF6
A
421 434Right-handed alpha
Helix 52
AF7
A
444 448Right-handed 310
Helix 53
AF8
A
470 479Right-handed alpha
Helix 54
AF9
A
501 509Right-handed alpha
Helix 55
AG1
A
528 540Right-handed alpha
Helix 56
AG2
A
546 554Right-handed alpha
Helix 57
AG3
A
558 563Right-handed alpha
Helix 58
AG4
A
581 589Right-handed alpha
Helix 59
AG5
A
612 622Right-handed alpha
Helix 60
AG6
A
627 639Right-handed alpha
Helix 61
AG7
A
648 653Right-handed alpha
Helix 62
AG8
A
665 675Right-handed alpha
Helix 63
AG9
A
677 688Right-handed alpha
Helix 64
AH1
A
690 697Right-handed alpha
Helix 65
AH2
A
707 730Right-handed alpha
Helix 66
AH3
A
733 741Right-handed alpha
Helix 67
AH4
A
744 770Right-handed alpha
Helix 68
AH5
A
772 781Right-handed alpha
Helix 69
AH6
A
781 786Right-handed alpha
Helix 70
AH7
A
792 797Right-handed alpha
Helix 71
AH8
A
803 814Right-handed alpha
Helix 72
AH9
A
826 835Right-handed alpha
Helix 73
AI1
A
849 858Right-handed alpha
Helix 74
AI2
A
871 891Right-handed alpha
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There are 10 sheets in PDB entry 9C5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
186 188parallel
Strand 3
C
139 143parallel
Strand 4
C
210 215parallel
Strand 5
C
260 265parallel
Strand 6
C
111 114parallel
Strand 7
C
283 284parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
297 298first strand
Strand 2
C
495 496parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
439 442first strand
Strand 2
C
340 343parallel
Strand 3
C
457 458parallel
Strand 4
C
492 493parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
463 464first strand
Strand 2
C
467 468anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
595 597first strand
Strand 2
C
609 611anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
186 188parallel
Strand 3
A
139 143parallel
Strand 4
A
210 215parallel
Strand 5
A
260 265parallel
Strand 6
A
111 114parallel
Strand 7
A
283 284parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
495 496parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 442first strand
Strand 2
A
340 343parallel
Strand 3
A
457 458parallel
Strand 4
A
492 493parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
467 468anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
609 611anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il