Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C5Y entry

There are 4 chains in PDB entry 9C5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 33	GLU 415
B	THR 33	GLU 415
C	THR 33	GLU 415
D	THR 33	GLU 415

There are 53 helices in PDB entry 9C5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	87	101	Right-handed alpha
Helix 3	AA3	A	111	126	Right-handed alpha
Helix 4	AA4	A	152	167	Right-handed alpha
Helix 5	AA5	A	179	185	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	190	195	Right-handed alpha
Helix 8	AA8	A	211	220	Right-handed alpha
Helix 9	AA9	A	231	246	Right-handed alpha
Helix 10	AB1	A	266	270	Right-handed 310
Helix 11	AB2	A	286	300	Right-handed alpha
Helix 12	AB3	A	317	336	Right-handed alpha
Helix 13	AB4	A	356	365	Right-handed alpha
Helix 14	AB5	B	51	66	Right-handed alpha
Helix 15	AB6	B	87	101	Right-handed alpha
Helix 16	AB7	B	111	126	Right-handed alpha
Helix 17	AB8	B	152	167	Right-handed alpha
Helix 18	AB9	B	179	185	Right-handed alpha
Helix 19	AC1	B	211	221	Right-handed alpha
Helix 20	AC2	B	231	245	Right-handed alpha
Helix 21	AC3	B	260	264	Right-handed 310
Helix 22	AC4	B	266	271	Right-handed alpha
Helix 23	AC5	B	286	300	Right-handed alpha
Helix 24	AC6	B	317	336	Right-handed alpha
Helix 25	AC7	B	355	365	Right-handed alpha
Helix 26	AC8	C	51	65	Right-handed alpha
Helix 27	AC9	C	87	101	Right-handed alpha
Helix 28	AD1	C	113	126	Right-handed alpha
Helix 29	AD2	C	155	167	Right-handed alpha
Helix 30	AD3	C	179	185	Right-handed alpha
Helix 31	AD4	C	185	190	Right-handed alpha
Helix 32	AD5	C	211	222	Right-handed alpha
Helix 33	AD6	C	231	245	Right-handed alpha
Helix 34	AD7	C	260	264	Right-handed 310
Helix 35	AD8	C	266	271	Right-handed alpha
Helix 36	AD9	C	286	300	Right-handed alpha
Helix 37	AE1	C	306	310	Right-handed 310
Helix 38	AE2	C	317	336	Right-handed alpha
Helix 39	AE3	C	355	365	Right-handed alpha
Helix 40	AE4	D	51	67	Right-handed alpha
Helix 41	AE5	D	87	101	Right-handed alpha
Helix 42	AE6	D	111	126	Right-handed alpha
Helix 43	AE7	D	155	167	Right-handed alpha
Helix 44	AE8	D	178	182	Right-handed 310
Helix 45	AE9	D	185	190	Right-handed alpha
Helix 46	AF1	D	190	195	Right-handed alpha
Helix 47	AF2	D	211	221	Right-handed alpha
Helix 48	AF3	D	231	245	Right-handed alpha
Helix 49	AF4	D	260	264	Right-handed 310
Helix 50	AF5	D	266	271	Right-handed alpha
Helix 51	AF6	D	286	301	Right-handed alpha
Helix 52	AF7	D	317	336	Right-handed alpha
Helix 53	AF8	D	355	365	Right-handed alpha

There are 18 sheets in PDB entry 9C5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	83	first strand
Strand 2	A	37	43	parallel
Strand 3	A	105	107	parallel
Strand 4	A	129	131	parallel
Strand 5	A	146	151	parallel
Strand 6	A	383	384	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	203	first strand
Strand 2	A	171	176	parallel
Strand 3	A	225	229	parallel
Strand 4	A	253	256	parallel
Strand 5	A	275	280	parallel
Strand 6	A	389	394	anti-parallel
Strand 7	A	399	406	anti-parallel
Strand 8	A	410	413	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	373	376	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	43	first strand
Strand 2	B	75	83	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	129	131	parallel
Strand 3	B	147	148	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	175	176	parallel
Strand 3	B	225	229	parallel
Strand 4	B	253	256	parallel
Strand 5	B	275	277	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	370	first strand
Strand 2	B	373	376	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	398	401	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	410	411	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	83	first strand
Strand 2	C	36	43	parallel
Strand 3	C	106	107	parallel
Strand 4	C	129	131	parallel
Strand 5	C	146	151	parallel
Strand 6	C	383	384	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	171	176	parallel
Strand 3	C	202	203	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	171	176	parallel
Strand 3	C	225	229	parallel
Strand 4	C	253	256	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	392	393	anti-parallel
Strand 3	C	400	401	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	373	374	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	406	first strand
Strand 2	C	410	411	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	83	first strand
Strand 2	D	37	43	parallel
Strand 3	D	105	107	parallel
Strand 4	D	129	131	parallel
Strand 5	D	147	148	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	173	176	parallel
Strand 3	D	225	229	parallel
Strand 4	D	253	256	parallel
Strand 5	D	277	278	parallel
Strand 6	D	389	395	anti-parallel
Strand 7	D	398	405	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	370	first strand
Strand 2	D	373	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5Y