Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C5Z entry

There are 4 chains in PDB entry 9C5Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 433	SER 834
B	ASN 430	LEU 843
C	SER 429	PHE 836
D	SER 432	GLU 841

There are 56 helices in PDB entry 9C5Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	461	475	Right-handed alpha
Helix 2	AA2	A	520	525	Right-handed alpha
Helix 3	AA3	A	560	582	Right-handed alpha
Helix 4	AA4	A	632	665	Right-handed alpha
Helix 5	AA5	A	672	677	Right-handed alpha
Helix 6	AA6	A	690	696	Right-handed alpha
Helix 7	AA7	A	699	712	Right-handed alpha
Helix 8	AA8	A	723	730	Right-handed alpha
Helix 9	AA9	A	739	749	Right-handed alpha
Helix 10	AB1	A	774	789	Right-handed alpha
Helix 11	AB2	A	789	801	Right-handed alpha
Helix 12	AB3	A	802	804	Right-handed 310
Helix 13	AB4	A	821	834	Right-handed alpha
Helix 14	AB5	B	455	457	Right-handed 310
Helix 15	AB6	B	461	474	Right-handed alpha
Helix 16	AB7	B	502	507	Right-handed alpha
Helix 17	AB8	B	520	525	Right-handed alpha
Helix 18	AB9	B	550	557	Right-handed alpha
Helix 19	AC1	B	560	584	Right-handed alpha
Helix 20	AC2	B	634	662	Right-handed alpha
Helix 21	AC3	B	670	677	Right-handed alpha
Helix 22	AC4	B	688	695	Right-handed alpha
Helix 23	AC5	B	702	712	Right-handed alpha
Helix 24	AC6	B	721	731	Right-handed alpha
Helix 25	AC7	B	739	749	Right-handed alpha
Helix 26	AC8	B	774	789	Right-handed alpha
Helix 27	AC9	B	789	798	Right-handed alpha
Helix 28	AD1	B	821	842	Right-handed alpha
Helix 29	AD2	C	454	457	Right-handed 310
Helix 30	AD3	C	461	474	Right-handed alpha
Helix 31	AD4	C	499	507	Right-handed alpha
Helix 32	AD5	C	520	527	Right-handed alpha
Helix 33	AD6	C	553	557	Right-handed 310
Helix 34	AD7	C	560	584	Right-handed alpha
Helix 35	AD8	C	631	665	Right-handed alpha
Helix 36	AD9	C	670	677	Right-handed alpha
Helix 37	AE1	C	691	697	Right-handed alpha
Helix 38	AE2	C	699	712	Right-handed alpha
Helix 39	AE3	C	720	731	Right-handed alpha
Helix 40	AE4	C	739	749	Right-handed alpha
Helix 41	AE5	C	773	789	Right-handed alpha
Helix 42	AE6	C	789	800	Right-handed alpha
Helix 43	AE7	C	822	836	Right-handed alpha
Helix 44	AE8	D	461	474	Right-handed alpha
Helix 45	AE9	D	520	527	Right-handed alpha
Helix 46	AF1	D	553	557	Right-handed 310
Helix 47	AF2	D	560	580	Right-handed alpha
Helix 48	AF3	D	634	665	Right-handed alpha
Helix 49	AF4	D	688	696	Right-handed alpha
Helix 50	AF5	D	701	712	Right-handed alpha
Helix 51	AF6	D	712	717	Right-handed alpha
Helix 52	AF7	D	720	731	Right-handed alpha
Helix 53	AF8	D	739	749	Right-handed alpha
Helix 54	AF9	D	773	787	Right-handed alpha
Helix 55	AG1	D	790	800	Right-handed alpha
Helix 56	AG2	D	816	841	Right-handed alpha

There are 16 sheets in PDB entry 9C5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	480	481	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	762	763	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	733	738	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	752	755	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	437	first strand
Strand 2	B	478	482	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	529	first strand
Strand 2	B	767	769	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	738	first strand
Strand 2	B	538	543	anti-parallel
Strand 3	B	752	755	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	685	first strand
Strand 2	B	717	718	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	478	480	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	459	460	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	515	first strand
Strand 2	C	765	768	anti-parallel
Strand 3	C	528	529	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	738	first strand
Strand 2	C	538	543	anti-parallel
Strand 3	C	752	754	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	482	first strand
Strand 2	D	434	437	parallel
Strand 3	D	512	513	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	536	first strand
Strand 2	D	762	764	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	684	first strand
Strand 2	D	733	738	parallel
Strand 3	D	538	543	anti-parallel
Strand 4	D	752	754	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C5Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5Z