Analysis of interatomic Contacts of Structural Units in PDB entry:
9C63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C63 entry

There are 4 chains in PDB entry 9C63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 255SER 293
A
 ASP 295HIS 410
B
 SER 255SER 293
B
 ASP 295SER 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9C63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
257 280Right-handed alpha
Helix 2
AA2
A
314 326Right-handed alpha
Helix 3
AA3
A
340 345Right-handed alpha
Helix 4
AA4
A
346 355Right-handed alpha
Helix 5
AA5
A
367 382Right-handed alpha
Helix 6
AA6
B
257 280Right-handed alpha
Helix 7
AA7
B
283 288Right-handed alpha
Helix 8
AA8
B
314 326Right-handed alpha
Helix 9
AA9
B
340 345Right-handed alpha
Helix 10
AB1
B
346 355Right-handed alpha
Helix 11
AB2
B
367 382Right-handed alpha
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There are 2 sheets in PDB entry 9C63. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
291 293anti-parallel
Strand 3
A
360 362anti-parallel
Strand 4
A
385 388parallel
Strand 5
A
392 396anti-parallel
Strand 6
A
402 406anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
291 293anti-parallel
Strand 3
B
360 362anti-parallel
Strand 4
B
385 388parallel
Strand 5
B
392 396anti-parallel
Strand 6
B
402 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il