Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C6C entry

There are 6 chains in PDB entry 9C6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 600
B	MET 1	ASN 600
C	ARG 3	ASN 600
D	ARG 3	ASN 600
E	MET 1	ASN 600
F	MET 1	ASN 600

There are187 helices in PDB entry 9C6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	14	Right-handed 310
Helix 2	AA2	A	15	21	Right-handed alpha
Helix 3	AA3	A	41	51	Right-handed alpha
Helix 4	AA4	A	70	88	Right-handed alpha
Helix 5	AA5	A	103	118	Right-handed alpha
Helix 6	AA6	A	133	144	Right-handed alpha
Helix 7	AA7	A	161	167	Right-handed alpha
Helix 8	AA8	A	182	188	Right-handed alpha
Helix 9	AA9	A	201	205	Right-handed alpha
Helix 10	AB1	A	208	213	Right-handed 310
Helix 11	AB2	A	215	224	Right-handed alpha
Helix 12	AB3	A	227	229	Right-handed 310
Helix 13	AB4	A	230	237	Right-handed alpha
Helix 14	AB5	A	247	249	Right-handed 310
Helix 15	AB6	A	252	261	Right-handed alpha
Helix 16	AB7	A	265	269	Right-handed 310
Helix 17	AB8	A	289	296	Right-handed alpha
Helix 18	AB9	A	307	325	Right-handed alpha
Helix 19	AC1	A	341	345	Right-handed 310
Helix 20	AC2	A	347	369	Right-handed alpha
Helix 21	AC3	A	390	405	Right-handed alpha
Helix 22	AC4	A	423	427	Right-handed 310
Helix 23	AC5	A	431	442	Right-handed alpha
Helix 24	AC6	A	454	464	Right-handed alpha
Helix 25	AC7	A	473	478	Right-handed 310
Helix 26	AC8	A	479	490	Right-handed alpha
Helix 27	AC9	A	496	504	Right-handed alpha
Helix 28	AD1	A	517	525	Right-handed alpha
Helix 29	AD2	A	534	539	Right-handed alpha
Helix 30	AD3	A	541	548	Right-handed alpha
Helix 31	AD4	A	548	553	Right-handed alpha
Helix 32	AD5	A	557	572	Right-handed alpha
Helix 33	AD6	A	575	596	Right-handed alpha
Helix 34	AD7	B	14	23	Right-handed alpha
Helix 35	AD8	B	41	51	Right-handed alpha
Helix 36	AD9	B	70	88	Right-handed alpha
Helix 37	AE1	B	103	118	Right-handed alpha
Helix 38	AE2	B	133	144	Right-handed alpha
Helix 39	AE3	B	157	162	Right-handed alpha
Helix 40	AE4	B	163	167	Right-handed 310
Helix 41	AE5	B	174	178	Right-handed 310
Helix 42	AE6	B	180	198	Right-handed alpha
Helix 43	AE7	B	201	205	Right-handed 310
Helix 44	AE8	B	215	224	Right-handed alpha
Helix 45	AE9	B	230	237	Right-handed alpha
Helix 46	AF1	B	247	249	Right-handed 310
Helix 47	AF2	B	252	262	Right-handed alpha
Helix 48	AF3	B	289	297	Right-handed alpha
Helix 49	AF4	B	307	325	Right-handed alpha
Helix 50	AF5	B	335	340	Right-handed alpha
Helix 51	AF6	B	347	369	Right-handed alpha
Helix 52	AF7	B	390	405	Right-handed alpha
Helix 53	AF8	B	423	427	Right-handed 310
Helix 54	AF9	B	431	441	Right-handed alpha
Helix 55	AG1	B	454	464	Right-handed alpha
Helix 56	AG2	B	475	478	Right-handed 310
Helix 57	AG3	B	479	490	Right-handed alpha
Helix 58	AG4	B	496	504	Right-handed alpha
Helix 59	AG5	B	517	525	Right-handed alpha
Helix 60	AG6	B	534	539	Right-handed alpha
Helix 61	AG7	B	541	548	Right-handed alpha
Helix 62	AG8	B	548	553	Right-handed alpha
Helix 63	AG9	B	557	572	Right-handed alpha
Helix 64	AH1	B	575	600	Right-handed alpha
Helix 65	AH2	C	14	20	Right-handed alpha
Helix 66	AH3	C	41	51	Right-handed alpha
Helix 67	AH4	C	70	89	Right-handed alpha
Helix 68	AH5	C	103	118	Right-handed alpha
Helix 69	AH6	C	133	143	Right-handed alpha
Helix 70	AH7	C	162	167	Right-handed alpha
Helix 71	AH8	C	180	188	Right-handed alpha
Helix 72	AH9	C	200	205	Right-handed alpha
Helix 73	AI1	C	208	214	Right-handed 310
Helix 74	AI2	C	215	222	Right-handed alpha
Helix 75	AI3	C	230	237	Right-handed alpha
Helix 76	AI4	C	247	249	Right-handed 310
Helix 77	AI5	C	253	262	Right-handed alpha
Helix 78	AI6	C	265	269	Right-handed 310
Helix 79	AI7	C	289	296	Right-handed alpha
Helix 80	AI8	C	307	325	Right-handed alpha
Helix 81	AI9	C	336	340	Right-handed 310
Helix 82	AJ1	C	341	345	Right-handed 310
Helix 83	AJ2	C	347	369	Right-handed alpha
Helix 84	AJ3	C	390	405	Right-handed alpha
Helix 85	AJ4	C	431	434	Right-handed 310
Helix 86	AJ5	C	435	442	Right-handed alpha
Helix 87	AJ6	C	456	464	Right-handed alpha
Helix 88	AJ7	C	475	478	Right-handed 310
Helix 89	AJ8	C	479	489	Right-handed alpha
Helix 90	AJ9	C	496	505	Right-handed alpha
Helix 91	AK1	C	517	525	Right-handed alpha
Helix 92	AK2	C	534	539	Right-handed alpha
Helix 93	AK3	C	541	548	Right-handed alpha
Helix 94	AK4	C	548	553	Right-handed alpha
Helix 95	AK5	C	557	572	Right-handed alpha
Helix 96	AK6	C	575	597	Right-handed alpha
Helix 97	AK7	C	598	600	Right-handed 310
Helix 98	AK8	D	14	23	Right-handed alpha
Helix 99	AK9	D	42	51	Right-handed alpha
Helix 100	AL1	D	70	88	Right-handed alpha
Helix 101	AL2	D	103	118	Right-handed alpha
Helix 102	AL3	D	133	143	Right-handed alpha
Helix 103	AL4	D	160	164	Right-handed 310
Helix 104	AL5	D	180	199	Right-handed alpha
Helix 105	AL6	D	200	206	Right-handed alpha
Helix 106	AL7	D	215	224	Right-handed alpha
Helix 107	AL8	D	230	237	Right-handed alpha
Helix 108	AL9	D	247	249	Right-handed 310
Helix 109	AM1	D	253	262	Right-handed alpha
Helix 110	AM2	D	295	300	Right-handed 310
Helix 111	AM3	D	308	325	Right-handed alpha
Helix 112	AM4	D	335	340	Right-handed alpha
Helix 113	AM5	D	347	369	Right-handed alpha
Helix 114	AM6	D	391	404	Right-handed alpha
Helix 115	AM7	D	405	407	Right-handed 310
Helix 116	AM8	D	431	435	Right-handed 310
Helix 117	AM9	D	454	464	Right-handed alpha
Helix 118	AN1	D	475	478	Right-handed 310
Helix 119	AN2	D	479	489	Right-handed alpha
Helix 120	AN3	D	496	504	Right-handed alpha
Helix 121	AN4	D	517	525	Right-handed alpha
Helix 122	AN5	D	534	539	Right-handed alpha
Helix 123	AN6	D	541	553	Right-handed alpha
Helix 124	AN7	D	557	571	Right-handed alpha
Helix 125	AN8	D	575	600	Right-handed alpha
Helix 126	AN9	E	14	21	Right-handed alpha
Helix 127	AO1	E	42	51	Right-handed alpha
Helix 128	AO2	E	70	89	Right-handed alpha
Helix 129	AO3	E	103	118	Right-handed alpha
Helix 130	AO4	E	134	144	Right-handed alpha
Helix 131	AO5	E	162	167	Right-handed alpha
Helix 132	AO6	E	174	178	Right-handed 310
Helix 133	AO7	E	180	190	Right-handed alpha
Helix 134	AO8	E	208	213	Right-handed 310
Helix 135	AO9	E	215	222	Right-handed alpha
Helix 136	AP1	E	230	237	Right-handed alpha
Helix 137	AP2	E	247	249	Right-handed 310
Helix 138	AP3	E	253	262	Right-handed alpha
Helix 139	AP4	E	265	269	Right-handed 310
Helix 140	AP5	E	289	296	Right-handed alpha
Helix 141	AP6	E	307	325	Right-handed alpha
Helix 142	AP7	E	335	340	Right-handed 310
Helix 143	AP8	E	341	345	Right-handed 310
Helix 144	AP9	E	347	369	Right-handed alpha
Helix 145	AQ1	E	390	406	Right-handed alpha
Helix 146	AQ2	E	423	427	Right-handed 310
Helix 147	AQ3	E	435	442	Right-handed alpha
Helix 148	AQ4	E	456	464	Right-handed alpha
Helix 149	AQ5	E	475	478	Right-handed 310
Helix 150	AQ6	E	479	490	Right-handed alpha
Helix 151	AQ7	E	496	504	Right-handed alpha
Helix 152	AQ8	E	517	525	Right-handed alpha
Helix 153	AQ9	E	534	539	Right-handed alpha
Helix 154	AR1	E	541	548	Right-handed alpha
Helix 155	AR2	E	548	553	Right-handed alpha
Helix 156	AR3	E	557	572	Right-handed alpha
Helix 157	AR4	E	575	598	Right-handed alpha
Helix 158	AR5	F	14	21	Right-handed alpha
Helix 159	AR6	F	41	51	Right-handed alpha
Helix 160	AR7	F	70	88	Right-handed alpha
Helix 161	AR8	F	103	118	Right-handed alpha
Helix 162	AR9	F	133	144	Right-handed alpha
Helix 163	AS1	F	157	162	Right-handed alpha
Helix 164	AS2	F	163	166	Right-handed 310
Helix 165	AS3	F	180	199	Right-handed alpha
Helix 166	AS4	F	215	224	Right-handed alpha
Helix 167	AS5	F	230	237	Right-handed alpha
Helix 168	AS6	F	247	249	Right-handed 310
Helix 169	AS7	F	252	262	Right-handed alpha
Helix 170	AS8	F	289	297	Right-handed alpha
Helix 171	AS9	F	298	300	Right-handed 310
Helix 172	AT1	F	301	306	Right-handed alpha
Helix 173	AT2	F	307	325	Right-handed alpha
Helix 174	AT3	F	335	339	Right-handed 310
Helix 175	AT4	F	341	345	Right-handed 310
Helix 176	AT5	F	347	369	Right-handed alpha
Helix 177	AT6	F	390	405	Right-handed alpha
Helix 178	AT7	F	429	437	Right-handed 310
Helix 179	AT8	F	454	465	Right-handed alpha
Helix 180	AT9	F	479	489	Right-handed alpha
Helix 181	AU1	F	496	504	Right-handed alpha
Helix 182	AU2	F	517	525	Right-handed alpha
Helix 183	AU3	F	534	539	Right-handed alpha
Helix 184	AU4	F	541	548	Right-handed alpha
Helix 185	AU5	F	548	553	Right-handed alpha
Helix 186	AU6	F	558	571	Right-handed alpha
Helix 187	AU7	F	575	600	Right-handed alpha

There are 16 sheets in PDB entry 9C6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	62	first strand
Strand 2	A	29	35	parallel
Strand 3	A	4	9	parallel
Strand 4	A	96	98	parallel
Strand 5	A	121	126	parallel
Strand 6	A	147	150	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	245	first strand
Strand 2	A	327	334	parallel
Strand 3	A	375	383	parallel
Strand 4	A	413	419	parallel
Strand 5	A	445	447	parallel
Strand 6	A	469	471	parallel
Strand 7	A	492	495	parallel
Strand 8	A	528	530	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	62	first strand
Strand 2	B	29	35	parallel
Strand 3	B	4	8	parallel
Strand 4	B	96	98	parallel
Strand 5	B	119	127	parallel
Strand 6	B	146	154	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	245	first strand
Strand 2	B	327	334	parallel
Strand 3	B	375	381	parallel
Strand 4	B	413	417	parallel
Strand 5	B	444	446	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	471	first strand
Strand 2	B	492	495	parallel
Strand 3	B	528	530	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	29	35	parallel
Strand 3	C	4	7	parallel
Strand 4	C	96	98	parallel
Strand 5	C	119	126	parallel
Strand 6	C	147	154	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	245	first strand
Strand 2	C	327	334	parallel
Strand 3	C	375	383	parallel
Strand 4	C	413	419	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	471	first strand
Strand 2	C	492	495	parallel
Strand 3	C	528	530	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	62	first strand
Strand 2	D	29	35	parallel
Strand 3	D	4	9	parallel
Strand 4	D	96	98	parallel
Strand 5	D	121	126	parallel
Strand 6	D	147	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	245	first strand
Strand 2	D	327	334	parallel
Strand 3	D	375	380	parallel
Strand 4	D	413	416	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	528	529	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	61	first strand
Strand 2	E	29	34	parallel
Strand 3	E	4	8	parallel
Strand 4	E	96	98	parallel
Strand 5	E	119	126	parallel
Strand 6	E	147	154	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	245	first strand
Strand 2	E	327	334	parallel
Strand 3	E	375	383	parallel
Strand 4	E	413	419	parallel
Strand 5	E	444	448	parallel
Strand 6	E	469	471	parallel
Strand 7	E	492	495	parallel
Strand 8	E	528	530	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	29	34	parallel
Strand 3	F	4	8	parallel
Strand 4	F	96	98	parallel
Strand 5	F	119	123	parallel
Strand 6	F	150	154	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	245	first strand
Strand 2	F	327	334	parallel
Strand 3	F	375	380	parallel
Strand 4	F	413	415	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	528	529	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6C