Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C6M entry

There are 3 chains in PDB entry 9C6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 16	LEU 276
B	SER 14	LEU 276
C	LYS 16	HIS 185

There are 45 helices in PDB entry 9C6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	64	Right-handed alpha
Helix 2	AA2	A	124	129	Right-handed alpha
Helix 3	AA3	A	166	169	Right-handed 310
Helix 4	AA4	A	221	233	Right-handed alpha
Helix 5	AA5	A	235	239	Right-handed 310
Helix 6	AA6	A	257	260	Right-handed 310
Helix 7	AA7	A	264	268	Right-handed 310
Helix 8	AA8	A	270	274	Right-handed 310
Helix 9	AA9	B	55	65	Right-handed alpha
Helix 10	AB1	B	124	129	Right-handed alpha
Helix 11	AB2	B	166	169	Right-handed 310
Helix 12	AB3	B	221	233	Right-handed alpha
Helix 13	AB4	B	235	239	Right-handed 310
Helix 14	AB5	B	257	260	Right-handed 310
Helix 15	AB6	B	270	274	Right-handed 310
Helix 16	AB7	C	55	65	Right-handed alpha
Helix 17	AB8	C	124	129	Right-handed alpha
Helix 18	AB9	C	166	169	Right-handed 310
Helix 19	AC1	C	205	210	Right-handed 310
Helix 20	AC2	C	221	233	Right-handed alpha
Helix 21	AC3	C	235	239	Right-handed 310
Helix 22	AC4	C	270	274	Right-handed 310
Helix 23	AC5	D	55	64	Right-handed alpha
Helix 24	AC6	D	124	129	Right-handed alpha
Helix 25	AC7	D	166	169	Right-handed 310
Helix 26	AC8	D	205	210	Right-handed 310
Helix 27	AC9	D	221	233	Right-handed alpha
Helix 28	AD1	D	235	239	Right-handed 310
Helix 29	AD2	D	257	260	Right-handed 310
Helix 30	AD3	D	270	274	Right-handed 310
Helix 31	AD4	E	55	65	Right-handed alpha
Helix 32	AD5	E	124	129	Right-handed alpha
Helix 33	AD6	E	166	169	Right-handed 310
Helix 34	AD7	E	205	210	Right-handed 310
Helix 35	AD8	E	221	233	Right-handed alpha
Helix 36	AD9	E	235	239	Right-handed 310
Helix 37	AE1	E	270	274	Right-handed 310
Helix 38	AE2	F	55	64	Right-handed alpha
Helix 39	AE3	F	124	129	Right-handed alpha
Helix 40	AE4	F	166	169	Right-handed 310
Helix 41	AE5	F	205	210	Right-handed 310
Helix 42	AE6	F	221	233	Right-handed alpha
Helix 43	AE7	F	235	239	Right-handed 310
Helix 44	AE8	F	257	260	Right-handed 310
Helix 45	AE9	F	270	274	Right-handed 310

There are 24 sheets in PDB entry 9C6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	251	255	parallel
Strand 3	A	241	246	anti-parallel
Strand 4	A	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	49	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	114	119	anti-parallel
Strand 3	A	85	89	anti-parallel
Strand 4	A	77	82	anti-parallel
Strand 5	A	172	176	anti-parallel
Strand 6	A	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	158	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	251	255	parallel
Strand 3	B	241	246	anti-parallel
Strand 4	B	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	50	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	114	119	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	77	82	anti-parallel
Strand 5	B	171	176	anti-parallel
Strand 6	B	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	158	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	48	54	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	251	255	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	114	119	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	77	81	anti-parallel
Strand 5	C	172	176	anti-parallel
Strand 6	C	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	158	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	251	255	parallel
Strand 3	D	241	246	anti-parallel
Strand 4	D	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	49	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	107	first strand
Strand 2	D	114	119	anti-parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	77	82	anti-parallel
Strand 5	D	172	176	anti-parallel
Strand 6	D	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	140	151	anti-parallel
Strand 3	D	158	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	251	255	parallel
Strand 3	E	241	246	anti-parallel
Strand 4	E	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	49	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	114	119	anti-parallel
Strand 3	E	85	89	anti-parallel
Strand 4	E	77	82	anti-parallel
Strand 5	E	172	176	anti-parallel
Strand 6	E	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	158	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	26	first strand
Strand 2	F	251	255	parallel
Strand 3	F	241	246	anti-parallel
Strand 4	F	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	31	first strand
Strand 2	F	49	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	106	first strand
Strand 2	F	115	119	anti-parallel
Strand 3	F	85	89	anti-parallel
Strand 4	F	77	82	anti-parallel
Strand 5	F	172	176	anti-parallel
Strand 6	F	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	133	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	158	164	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6M