Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C6N entry

There are 5 chains in PDB entry 9C6N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLN 780	LYS 2279
H	GLY 432	GLU 484
I	PRO 70	ARG 252
J	ILE 5	PHE 375
L	GLY 8	PRO 429

There are 54 helices in PDB entry 9C6N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	780	791	Right-handed alpha
Helix 2	AA2	G	810	854	Right-handed alpha
Helix 3	AA3	G	2225	2230	Right-handed alpha
Helix 4	AA4	I	86	90	Right-handed 310
Helix 5	AA5	I	118	120	Right-handed 310
Helix 6	AA6	I	124	130	Right-handed 310
Helix 7	AA7	I	139	146	Right-handed alpha
Helix 8	AA8	I	153	168	Right-handed alpha
Helix 9	AA9	I	170	178	Right-handed alpha
Helix 10	AB1	I	187	207	Right-handed alpha
Helix 11	AB2	I	219	235	Right-handed alpha
Helix 12	AB3	I	237	251	Right-handed alpha
Helix 13	AB4	J	55	62	Right-handed alpha
Helix 14	AB5	J	78	94	Right-handed alpha
Helix 15	AB6	J	97	101	Right-handed 310
Helix 16	AB7	J	112	126	Right-handed alpha
Helix 17	AB8	J	137	146	Right-handed alpha
Helix 18	AB9	J	172	175	Right-handed 310
Helix 19	AC1	J	181	197	Right-handed alpha
Helix 20	AC2	J	202	217	Right-handed alpha
Helix 21	AC3	J	222	233	Right-handed alpha
Helix 22	AC4	J	252	257	Right-handed alpha
Helix 23	AC5	J	258	268	Right-handed 310
Helix 24	AC6	J	273	285	Right-handed alpha
Helix 25	AC7	J	289	296	Right-handed alpha
Helix 26	AC8	J	301	306	Right-handed 310
Helix 27	AC9	J	308	321	Right-handed alpha
Helix 28	AD1	J	334	336	Right-handed 310
Helix 29	AD2	J	337	349	Right-handed alpha
Helix 30	AD3	J	350	356	Right-handed 310
Helix 31	AD4	J	359	366	Right-handed alpha
Helix 32	AD5	J	367	374	Right-handed alpha
Helix 33	AD6	L	71	77	Right-handed alpha
Helix 34	AD7	L	95	111	Right-handed alpha
Helix 35	AD8	L	114	118	Right-handed 310
Helix 36	AD9	L	129	144	Right-handed alpha
Helix 37	AE1	L	154	163	Right-handed alpha
Helix 38	AE2	L	189	192	Right-handed 310
Helix 39	AE3	L	198	214	Right-handed alpha
Helix 40	AE4	L	219	221	Right-handed 310
Helix 41	AE5	L	247	267	Right-handed alpha
Helix 42	AE6	L	275	281	Right-handed alpha
Helix 43	AE7	L	299	304	Right-handed alpha
Helix 44	AE8	L	305	309	Right-handed 310
Helix 45	AE9	L	310	314	Right-handed 310
Helix 46	AF1	L	324	335	Right-handed alpha
Helix 47	AF2	L	336	339	Right-handed 310
Helix 48	AF3	L	340	346	Right-handed alpha
Helix 49	AF4	L	352	357	Right-handed 310
Helix 50	AF5	L	359	372	Right-handed alpha
Helix 51	AF6	L	385	391	Right-handed alpha
Helix 52	AF7	L	391	403	Right-handed alpha
Helix 53	AF8	L	404	410	Right-handed 310
Helix 54	AF9	L	413	428	Right-handed alpha

There are 16 sheets in PDB entry 9C6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2222	2224	first strand
Strand 2	I	74	76	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	441	445	first strand
Strand 2	H	450	459	anti-parallel
Strand 3	H	465	469	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	101	first strand
Strand 2	I	110	116	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	8	11	anti-parallel
Strand 4	J	103	107	parallel
Strand 5	J	131	136	parallel
Strand 6	J	357	358	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	35	37	anti-parallel
Strand 3	J	66	68	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	72	first strand
Strand 2	J	75	76	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	169	170	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	176	178	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	169	170	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	150	155	anti-parallel
Strand 4	J	297	300	parallel
Strand 5	J	329	330	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	238	241	first strand
Strand 2	J	247	250	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	38	first strand
Strand 2	L	22	27	anti-parallel
Strand 3	L	14	18	anti-parallel
Strand 4	L	120	124	parallel
Strand 5	L	148	153	parallel
Strand 6	L	411	412	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	69	first strand
Strand 2	L	41	44	anti-parallel
Strand 3	L	83	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	88	89	first strand
Strand 2	L	92	93	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	186	187	first strand
Strand 2	L	177	183	anti-parallel
Strand 3	L	193	195	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	186	187	first strand
Strand 2	L	177	183	anti-parallel
Strand 3	L	167	172	anti-parallel
Strand 4	L	348	351	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	223	226	first strand
Strand 2	L	237	239	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	285	288	first strand
Strand 2	L	294	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C6N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6N