Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C6O entry

There are 2 chains in PDB entry 9C6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 386VAL 594
A
 THR 21PRO 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 9C6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
386 390Right-handed 310
Helix 2
AA2
B
395 399Right-handed 310
Helix 3
AA3
B
411 415Right-handed alpha
Helix 4
AA4
B
452 457Right-handed 310
Helix 5
AA5
B
463 468Right-handed alpha
Helix 6
AA6
B
535 549Right-handed alpha
Helix 7
AA7
A
22 53Right-handed alpha
Helix 8
AA8
A
56 82Right-handed alpha
Helix 9
AA9
A
83 84Right-handed 310
Helix 10
AB1
A
85 89Right-handed 310
Helix 11
AB2
A
91 103Right-handed alpha
Helix 12
AB3
A
111 127Right-handed alpha
Helix 13
AB4
A
145 153Right-handed alpha
Helix 14
AB5
A
155 170Right-handed alpha
Helix 15
AB6
A
174 192Right-handed alpha
Helix 16
AB7
A
196 202Right-handed alpha
Helix 17
AB8
A
203 206Right-handed 310
Helix 18
AB9
A
210 214Right-handed 310
Helix 19
AC1
A
218 250Right-handed alpha
Helix 20
AC2
A
263 265Right-handed 310
Helix 21
AC3
A
273 275Right-handed 310
Helix 22
AC4
A
276 281Right-handed alpha
Helix 23
AC5
A
291 298Right-handed alpha
Helix 24
AC6
A
301 317Right-handed alpha
Helix 25
AC7
A
324 329Right-handed alpha
Helix 26
AC8
A
364 383Right-handed alpha
Helix 27
AC9
A
387 391Right-handed 310
Helix 28
AD1
A
397 410Right-handed alpha
Helix 29
AD2
A
412 419Right-handed alpha
Helix 30
AD3
A
430 445Right-handed alpha
Helix 31
AD4
A
447 464Right-handed alpha
Helix 32
AD5
A
467 469Right-handed 310
Helix 33
AD6
A
470 483Right-handed alpha
Helix 34
AD7
A
497 500Right-handed 310
Helix 35
AD8
A
501 506Right-handed alpha
Helix 36
AD9
A
511 531Right-handed alpha
Helix 37
AE1
A
536 540Right-handed 310
Helix 38
AE2
A
545 557Right-handed alpha
Helix 39
AE3
A
563 573Right-handed alpha
Helix 40
AE4
A
579 586Right-handed alpha
Helix 41
AE5
A
586 597Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9C6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 404first strand
Strand 2
B
441 447anti-parallel
Strand 3
B
586 593anti-parallel
Strand 4
B
477 484anti-parallel
Strand 5
B
419 426anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 525first strand
Strand 2
B
497 508anti-parallel
Strand 3
B
571 578anti-parallel
Strand 4
B
552 557anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
135 141anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
485 486parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
354 357anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il