Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C6Q entry

There are 2 chains in PDB entry 9C6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 C 12 A 23
C
 MET 1SER 1190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9C6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
4 10Right-handed 310
Helix 2
AA2
C
23 37Right-handed alpha
Helix 3
AA3
C
55 78Right-handed alpha
Helix 4
AA4
C
94 111Right-handed alpha
Helix 5
AA5
C
121 130Right-handed alpha
Helix 6
AA6
C
137 143Right-handed alpha
Helix 7
AA7
C
146 157Right-handed alpha
Helix 8
AA8
C
162 178Right-handed alpha
Helix 9
AA9
C
184 208Right-handed alpha
Helix 10
AB1
C
216 227Right-handed alpha
Helix 11
AB2
C
227 234Right-handed alpha
Helix 12
AB3
C
244 248Right-handed alpha
Helix 13
AB4
C
259 263Right-handed 310
Helix 14
AB5
C
276 287Right-handed alpha
Helix 15
AB6
C
295 304Right-handed alpha
Helix 16
AB7
C
318 321Right-handed 310
Helix 17
AB8
C
322 337Right-handed alpha
Helix 18
AB9
C
401 433Right-handed alpha
Helix 19
AC1
C
448 459Right-handed alpha
Helix 20
AC2
C
461 463Right-handed 310
Helix 21
AC3
C
464 471Right-handed alpha
Helix 22
AC4
C
524 536Right-handed alpha
Helix 23
AC5
C
556 564Right-handed alpha
Helix 24
AC6
C
572 587Right-handed alpha
Helix 25
AC7
C
605 616Right-handed alpha
Helix 26
AC8
C
621 629Right-handed alpha
Helix 27
AC9
C
637 657Right-handed alpha
Helix 28
AD1
C
672 674Right-handed 310
Helix 29
AD2
C
675 693Right-handed alpha
Helix 30
AD3
C
704 711Right-handed alpha
Helix 31
AD4
C
713 723Right-handed alpha
Helix 32
AD5
C
734 738Right-handed 310
Helix 33
AD6
C
789 808Right-handed alpha
Helix 34
AD7
C
811 824Right-handed alpha
Helix 35
AD8
C
827 836Right-handed alpha
Helix 36
AD9
C
839 855Right-handed alpha
Helix 37
AE1
C
874 879Right-handed alpha
Helix 38
AE2
C
891 901Right-handed alpha
Helix 39
AE3
C
909 938Right-handed alpha
Helix 40
AE4
C
943 960Right-handed alpha
Helix 41
AE5
C
1000 1002Right-handed 310
Helix 42
AE6
C
1009 1014Right-handed alpha
Helix 43
AE7
C
1014 1020Right-handed alpha
Helix 44
AE8
C
1024 1032Right-handed alpha
Helix 45
AE9
C
1045 1052Right-handed alpha
Helix 46
AF1
C
1052 1067Right-handed alpha
Helix 47
AF2
C
1112 1127Right-handed alpha
Helix 48
AF3
C
1176 1187Right-handed alpha
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There are 10 sheets in PDB entry 9C6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 48first strand
Strand 2
C
537 543parallel
Strand 3
C
267 272parallel
Strand 4
C
87 88parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
239 243parallel
Strand 3
C
132 134parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
251 252first strand
Strand 2
C
257 258anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
517 521anti-parallel
Strand 3
C
499 504anti-parallel
Strand 4
C
354 358anti-parallel
Strand 5
C
364 366anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 344first strand
Strand 2
C
382 386parallel
Strand 3
C
373 377anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
595 601first strand
Strand 2
C
865 871parallel
Strand 3
C
773 776parallel
Strand 4
C
662 667parallel
Strand 5
C
726 732parallel
Strand 6
C
697 700parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
744 745first strand
Strand 2
C
768 769anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
974 975first strand
Strand 2
C
1043 1044anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
997 998first strand
Strand 2
C
983 986anti-parallel
Strand 3
C
1006 1008anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1072 1074first strand
Strand 2
C
1086 1089anti-parallel
Strand 3
C
1097 1101anti-parallel
Strand 4
C
1131 1134parallel
Strand 5
C
1161 1164parallel
Strand 6
C
1145 1147anti-parallel
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