Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C6T entry

There are 2 chains in PDB entry 9C6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 222TYR 464
B
 ASP 222GLU 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9C6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 277Right-handed alpha
Helix 2
AA2
A
295 301Right-handed alpha
Helix 3
AA3
A
305 319Right-handed alpha
Helix 4
AA4
A
327 331Right-handed 310
Helix 5
AA5
A
357 362Right-handed alpha
Helix 6
AA6
A
411 420Right-handed alpha
Helix 7
AA7
A
420 426Right-handed alpha
Helix 8
AA8
A
429 437Right-handed alpha
Helix 9
AA9
A
450 462Right-handed alpha
Helix 10
AB1
B
270 275Right-handed 310
Helix 11
AB2
B
297 302Right-handed alpha
Helix 12
AB3
B
305 317Right-handed alpha
Helix 13
AB4
B
327 331Right-handed 310
Helix 14
AB5
B
357 362Right-handed alpha
Helix 15
AB6
B
411 420Right-handed alpha
Helix 16
AB7
B
420 426Right-handed alpha
Helix 17
AB8
B
429 437Right-handed alpha
Helix 18
AB9
B
450 462Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9C6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 242first strand
Strand 2
A
248 256anti-parallel
Strand 3
B
248 256anti-parallel
Strand 4
B
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
344 350anti-parallel
Strand 3
A
367 371anti-parallel
Strand 4
A
384 387anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 339first strand
Strand 2
B
344 350anti-parallel
Strand 3
B
367 371anti-parallel
Strand 4
B
384 387anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il