Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C6W entry

There are 2 chains in PDB entry 9C6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 323	GLU 2275
B	ASN 323	GLU 2275

There are 14 helices in PDB entry 9C6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2049	2053	Right-handed 310
Helix 2	AA2	A	2056	2085	Right-handed alpha
Helix 3	AA3	A	2137	2150	Right-handed alpha
Helix 4	AA4	A	2151	2162	Right-handed alpha
Helix 5	AA5	A	2162	2175	Right-handed alpha
Helix 6	AA6	A	2175	2180	Right-handed alpha
Helix 7	AA7	A	2253	2255	Right-handed 310
Helix 8	AA8	B	2049	2053	Right-handed 310
Helix 9	AA9	B	2056	2085	Right-handed alpha
Helix 10	AB1	B	2137	2150	Right-handed alpha
Helix 11	AB2	B	2151	2162	Right-handed alpha
Helix 12	AB3	B	2162	2175	Right-handed alpha
Helix 13	AB4	B	2175	2180	Right-handed alpha
Helix 14	AB5	B	2253	2255	Right-handed 310

There are 15 sheets in PDB entry 9C6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1000	1003	first strand
Strand 2	B	1001	1004	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1007	1012	first strand
Strand 2	A	1022	1031	anti-parallel
Strand 3	A	1063	1071	anti-parallel
Strand 4	A	1051	1052	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1007	1012	first strand
Strand 2	A	1022	1031	anti-parallel
Strand 3	A	1063	1071	anti-parallel
Strand 4	A	1056	1057	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1045	1046	first strand
Strand 2	A	1037	1042	anti-parallel
Strand 3	A	1079	1084	anti-parallel
Strand 4	A	1092	1095	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2046	2047	first strand
Strand 2	A	2031	2037	anti-parallel
Strand 3	A	2021	2028	anti-parallel
Strand 4	A	2003	2012	anti-parallel
Strand 5	A	2094	2103	anti-parallel
Strand 6	A	2109	2118	anti-parallel
Strand 7	A	2121	2126	anti-parallel
Strand 8	A	2133	2135	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2186	2193	first strand
Strand 2	A	2198	2208	anti-parallel
Strand 3	A	2241	2250	anti-parallel
Strand 4	A	2229	2230	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2186	2193	first strand
Strand 2	A	2198	2208	anti-parallel
Strand 3	A	2241	2250	anti-parallel
Strand 4	A	2234	2235	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2222	2223	first strand
Strand 2	A	2214	2219	anti-parallel
Strand 3	A	2257	2262	anti-parallel
Strand 4	A	2270	2272	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1007	1012	first strand
Strand 2	B	1022	1031	anti-parallel
Strand 3	B	1063	1071	anti-parallel
Strand 4	B	1051	1052	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1007	1012	first strand
Strand 2	B	1022	1031	anti-parallel
Strand 3	B	1063	1071	anti-parallel
Strand 4	B	1056	1057	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1045	1046	first strand
Strand 2	B	1037	1042	anti-parallel
Strand 3	B	1079	1084	anti-parallel
Strand 4	B	1092	1095	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2046	2047	first strand
Strand 2	B	2031	2037	anti-parallel
Strand 3	B	2021	2028	anti-parallel
Strand 4	B	2003	2012	anti-parallel
Strand 5	B	2094	2103	anti-parallel
Strand 6	B	2109	2118	anti-parallel
Strand 7	B	2121	2126	anti-parallel
Strand 8	B	2133	2135	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2186	2193	first strand
Strand 2	B	2198	2208	anti-parallel
Strand 3	B	2241	2250	anti-parallel
Strand 4	B	2229	2230	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2186	2193	first strand
Strand 2	B	2198	2208	anti-parallel
Strand 3	B	2241	2250	anti-parallel
Strand 4	B	2234	2235	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2222	2223	first strand
Strand 2	B	2214	2219	anti-parallel
Strand 3	B	2257	2262	anti-parallel
Strand 4	B	2270	2272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C6W