Analysis of interatomic Contacts of Structural Units in PDB entry:
9C7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C7Q entry

There are 4 chains in PDB entry 9C7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	HIS 840
B	PRO 32	TRP 842
C	LYS 25	HIS 840
D	PRO 32	TRP 842

There are112 helices in PDB entry 9C7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	54	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	104	114	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed 310
Helix 6	AA6	A	146	158	Right-handed alpha
Helix 7	AA7	A	171	185	Right-handed alpha
Helix 8	AA8	A	186	188	Right-handed 310
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	251	255	Right-handed 310
Helix 12	AB3	A	256	261	Right-handed alpha
Helix 13	AB4	A	276	298	Right-handed alpha
Helix 14	AB5	A	317	327	Right-handed alpha
Helix 15	AB6	A	458	470	Right-handed alpha
Helix 16	AB7	A	499	507	Right-handed alpha
Helix 17	AB8	A	520	527	Right-handed alpha
Helix 18	AB9	A	559	583	Right-handed alpha
Helix 19	AC1	A	602	616	Right-handed alpha
Helix 20	AC2	A	626	656	Right-handed alpha
Helix 21	AC3	A	665	668	Right-handed 310
Helix 22	AC4	A	669	674	Right-handed alpha
Helix 23	AC5	A	687	696	Right-handed alpha
Helix 24	AC6	A	699	707	Right-handed alpha
Helix 25	AC7	A	713	723	Right-handed alpha
Helix 26	AC8	A	733	743	Right-handed alpha
Helix 27	AC9	A	767	782	Right-handed alpha
Helix 28	AD1	A	784	793	Right-handed alpha
Helix 29	AD2	A	813	840	Right-handed alpha
Helix 30	AD3	B	47	54	Right-handed alpha
Helix 31	AD4	B	78	93	Right-handed alpha
Helix 32	AD5	B	108	121	Right-handed alpha
Helix 33	AD6	B	150	165	Right-handed alpha
Helix 34	AD7	B	179	193	Right-handed alpha
Helix 35	AD8	B	216	221	Right-handed alpha
Helix 36	AD9	B	232	246	Right-handed alpha
Helix 37	AE1	B	287	310	Right-handed alpha
Helix 38	AE2	B	458	472	Right-handed alpha
Helix 39	AE3	B	495	502	Right-handed alpha
Helix 40	AE4	B	515	522	Right-handed alpha
Helix 41	AE5	B	554	579	Right-handed alpha
Helix 42	AE6	B	600	613	Right-handed alpha
Helix 43	AE7	B	624	648	Right-handed alpha
Helix 44	AE8	B	648	653	Right-handed alpha
Helix 45	AE9	B	666	671	Right-handed alpha
Helix 46	AF1	B	687	697	Right-handed alpha
Helix 47	AF2	B	697	705	Right-handed alpha
Helix 48	AF3	B	706	708	Right-handed 310
Helix 49	AF4	B	711	721	Right-handed alpha
Helix 50	AF5	B	731	740	Right-handed alpha
Helix 51	AF6	B	750	752	Right-handed 310
Helix 52	AF7	B	770	784	Right-handed alpha
Helix 53	AF8	B	785	795	Right-handed alpha
Helix 54	AF9	B	816	842	Right-handed alpha
Helix 55	AG1	C	35	54	Right-handed alpha
Helix 56	AG2	C	70	81	Right-handed alpha
Helix 57	AG3	C	82	85	Right-handed 310
Helix 58	AG4	C	104	114	Right-handed alpha
Helix 59	AG5	C	126	130	Right-handed 310
Helix 60	AG6	C	143	145	Right-handed 310
Helix 61	AG7	C	146	159	Right-handed alpha
Helix 62	AG8	C	170	187	Right-handed alpha
Helix 63	AG9	C	204	213	Right-handed alpha
Helix 64	AH1	C	224	238	Right-handed alpha
Helix 65	AH2	C	251	255	Right-handed 310
Helix 66	AH3	C	256	261	Right-handed alpha
Helix 67	AH4	C	277	297	Right-handed alpha
Helix 68	AH5	C	317	327	Right-handed alpha
Helix 69	AH6	C	458	470	Right-handed alpha
Helix 70	AH7	C	499	507	Right-handed alpha
Helix 71	AH8	C	520	526	Right-handed alpha
Helix 72	AH9	C	559	583	Right-handed alpha
Helix 73	AI1	C	602	615	Right-handed alpha
Helix 74	AI2	C	626	657	Right-handed alpha
Helix 75	AI3	C	665	668	Right-handed 310
Helix 76	AI4	C	669	674	Right-handed alpha
Helix 77	AI5	C	687	696	Right-handed alpha
Helix 78	AI6	C	699	707	Right-handed alpha
Helix 79	AI7	C	713	723	Right-handed alpha
Helix 80	AI8	C	733	743	Right-handed alpha
Helix 81	AI9	C	768	782	Right-handed alpha
Helix 82	AJ1	C	783	793	Right-handed alpha
Helix 83	AJ2	C	809	812	Right-handed 310
Helix 84	AJ3	C	813	840	Right-handed alpha
Helix 85	AJ4	D	47	54	Right-handed alpha
Helix 86	AJ5	D	78	93	Right-handed alpha
Helix 87	AJ6	D	108	121	Right-handed alpha
Helix 88	AJ7	D	128	133	Right-handed 310
Helix 89	AJ8	D	150	165	Right-handed alpha
Helix 90	AJ9	D	179	193	Right-handed alpha
Helix 91	AK1	D	214	221	Right-handed alpha
Helix 92	AK2	D	232	246	Right-handed alpha
Helix 93	AK3	D	287	310	Right-handed alpha
Helix 94	AK4	D	334	339	Right-handed alpha
Helix 95	AK5	D	458	472	Right-handed alpha
Helix 96	AK6	D	494	502	Right-handed alpha
Helix 97	AK7	D	515	522	Right-handed alpha
Helix 98	AK8	D	545	550	Right-handed 310
Helix 99	AK9	D	554	579	Right-handed alpha
Helix 100	AL1	D	600	613	Right-handed alpha
Helix 101	AL2	D	624	648	Right-handed alpha
Helix 102	AL3	D	648	653	Right-handed alpha
Helix 103	AL4	D	666	671	Right-handed alpha
Helix 104	AL5	D	687	697	Right-handed alpha
Helix 105	AL6	D	697	705	Right-handed alpha
Helix 106	AL7	D	706	708	Right-handed 310
Helix 107	AL8	D	711	722	Right-handed alpha
Helix 108	AL9	D	731	741	Right-handed alpha
Helix 109	AM1	D	750	752	Right-handed 310
Helix 110	AM2	D	769	785	Right-handed alpha
Helix 111	AM3	D	785	795	Right-handed alpha
Helix 112	AM4	D	816	842	Right-handed alpha

There are 33 sheets in PDB entry 9C7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	26	33	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	164	167	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	249	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	368	anti-parallel
Strand 4	A	371	374	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	478	first strand
Strand 2	A	398	402	parallel
Strand 3	A	512	513	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	433	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	489	first strand
Strand 2	A	496	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	728	732	parallel
Strand 3	A	534	543	anti-parallel
Strand 4	A	746	748	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	728	732	parallel
Strand 3	A	534	543	anti-parallel
Strand 4	A	753	758	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	41	first strand
Strand 2	B	66	74	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	144	146	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	169	174	parallel
Strand 3	B	226	229	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	281	parallel
Strand 6	B	361	366	anti-parallel
Strand 7	B	372	379	anti-parallel
Strand 8	B	382	385	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	346	347	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	474	475	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	479	first strand
Strand 2	B	408	410	parallel
Strand 3	B	507	508	parallel
Strand 4	B	763	764	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	449	457	anti-parallel
Strand 3	B	434	441	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	489	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	726	730	parallel
Strand 3	B	533	538	anti-parallel
Strand 4	B	746	748	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	26	33	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	163	167	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	249	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	357	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	477	first strand
Strand 2	C	397	401	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	753	759	anti-parallel
Strand 3	C	534	543	anti-parallel
Strand 4	C	728	732	anti-parallel
Strand 5	C	681	683	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	753	759	anti-parallel
Strand 3	C	534	543	anti-parallel
Strand 4	C	746	748	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	529	first strand
Strand 2	C	761	763	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	74	first strand
Strand 2	D	33	41	parallel
Strand 3	D	97	100	parallel
Strand 4	D	124	126	parallel
Strand 5	D	144	146	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	205	first strand
Strand 2	D	169	174	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	257	parallel
Strand 5	D	277	281	parallel
Strand 6	D	361	366	anti-parallel
Strand 7	D	372	379	anti-parallel
Strand 8	D	382	385	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	479	first strand
Strand 2	D	405	410	parallel
Strand 3	D	507	508	parallel
Strand 4	D	763	764	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	449	457	anti-parallel
Strand 3	D	434	441	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	489	first strand
Strand 2	D	492	493	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	759	760	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	682	first strand
Strand 2	D	726	730	parallel
Strand 3	D	533	538	anti-parallel
Strand 4	D	746	748	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C7Q