Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C8D entry

There are 24 chains in PDB entry 9C8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 41	LEU 246
B	LEU 41	LEU 246
C	LEU 41	LEU 246
D	LEU 41	LEU 246
E	LEU 41	LEU 246
F	LEU 41	LEU 246
G	LEU 41	LEU 246
H	LEU 41	LEU 246
I	LEU 41	LEU 246
J	LEU 41	LEU 246
K	LEU 41	LEU 246
L	LEU 41	LEU 246
M	LEU 5	VAL 25
N	LEU 5	VAL 25
O	LEU 5	VAL 25
P	LEU 5	VAL 25
Q	LEU 5	VAL 25
R	LEU 5	VAL 25
S	LEU 5	VAL 25
T	LEU 5	VAL 25
U	LEU 5	VAL 25
V	LEU 5	VAL 25
W	LEU 5	VAL 25
X	LEU 5	VAL 25

There are 96 helices in PDB entry 9C8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	57	Right-handed alpha
Helix 2	AA2	A	117	124	Right-handed alpha
Helix 3	AA3	A	153	164	Right-handed alpha
Helix 4	AA4	A	164	170	Right-handed alpha
Helix 5	AA5	A	224	230	Right-handed alpha
Helix 6	AA6	A	230	246	Right-handed alpha
Helix 7	AA7	B	42	57	Right-handed alpha
Helix 8	AA8	B	117	122	Right-handed alpha
Helix 9	AA9	B	153	164	Right-handed alpha
Helix 10	AB1	B	164	170	Right-handed alpha
Helix 11	AB2	B	224	230	Right-handed alpha
Helix 12	AB3	B	230	246	Right-handed alpha
Helix 13	AB4	C	42	57	Right-handed alpha
Helix 14	AB5	C	117	122	Right-handed alpha
Helix 15	AB6	C	153	164	Right-handed alpha
Helix 16	AB7	C	164	170	Right-handed alpha
Helix 17	AB8	C	224	230	Right-handed alpha
Helix 18	AB9	C	230	246	Right-handed alpha
Helix 19	AC1	D	42	57	Right-handed alpha
Helix 20	AC2	D	117	122	Right-handed alpha
Helix 21	AC3	D	153	164	Right-handed alpha
Helix 22	AC4	D	164	170	Right-handed alpha
Helix 23	AC5	D	224	230	Right-handed alpha
Helix 24	AC6	D	230	246	Right-handed alpha
Helix 25	AC7	E	42	57	Right-handed alpha
Helix 26	AC8	E	117	122	Right-handed alpha
Helix 27	AC9	E	153	164	Right-handed alpha
Helix 28	AD1	E	164	170	Right-handed alpha
Helix 29	AD2	E	224	230	Right-handed alpha
Helix 30	AD3	E	230	246	Right-handed alpha
Helix 31	AD4	F	42	57	Right-handed alpha
Helix 32	AD5	F	117	122	Right-handed alpha
Helix 33	AD6	F	153	164	Right-handed alpha
Helix 34	AD7	F	164	170	Right-handed alpha
Helix 35	AD8	F	224	230	Right-handed alpha
Helix 36	AD9	F	230	246	Right-handed alpha
Helix 37	AE1	G	42	57	Right-handed alpha
Helix 38	AE2	G	117	122	Right-handed alpha
Helix 39	AE3	G	153	164	Right-handed alpha
Helix 40	AE4	G	164	170	Right-handed alpha
Helix 41	AE5	G	224	230	Right-handed alpha
Helix 42	AE6	G	230	246	Right-handed alpha
Helix 43	AE7	H	42	57	Right-handed alpha
Helix 44	AE8	H	117	122	Right-handed alpha
Helix 45	AE9	H	153	164	Right-handed alpha
Helix 46	AF1	H	164	170	Right-handed alpha
Helix 47	AF2	H	224	230	Right-handed alpha
Helix 48	AF3	H	230	246	Right-handed alpha
Helix 49	AF4	I	42	57	Right-handed alpha
Helix 50	AF5	I	117	122	Right-handed alpha
Helix 51	AF6	I	153	164	Right-handed alpha
Helix 52	AF7	I	164	170	Right-handed alpha
Helix 53	AF8	I	224	230	Right-handed alpha
Helix 54	AF9	I	230	246	Right-handed alpha
Helix 55	AG1	J	42	57	Right-handed alpha
Helix 56	AG2	J	117	122	Right-handed alpha
Helix 57	AG3	J	153	164	Right-handed alpha
Helix 58	AG4	J	164	170	Right-handed alpha
Helix 59	AG5	J	224	230	Right-handed alpha
Helix 60	AG6	J	230	246	Right-handed alpha
Helix 61	AG7	K	42	57	Right-handed alpha
Helix 62	AG8	K	117	122	Right-handed alpha
Helix 63	AG9	K	153	164	Right-handed alpha
Helix 64	AH1	K	164	170	Right-handed alpha
Helix 65	AH2	K	224	230	Right-handed alpha
Helix 66	AH3	K	230	246	Right-handed alpha
Helix 67	AH4	L	42	57	Right-handed alpha
Helix 68	AH5	L	117	122	Right-handed alpha
Helix 69	AH6	L	153	164	Right-handed alpha
Helix 70	AH7	L	164	170	Right-handed alpha
Helix 71	AH8	L	224	230	Right-handed alpha
Helix 72	AH9	L	230	246	Right-handed alpha
Helix 73	AI1	M	11	18	Right-handed alpha
Helix 74	AI2	M	19	23	Right-handed 310
Helix 75	AI3	N	11	18	Right-handed alpha
Helix 76	AI4	N	19	23	Right-handed 310
Helix 77	AI5	O	11	16	Right-handed alpha
Helix 78	AI6	O	19	23	Right-handed 310
Helix 79	AI7	P	11	18	Right-handed alpha
Helix 80	AI8	P	19	23	Right-handed 310
Helix 81	AI9	Q	11	18	Right-handed alpha
Helix 82	AJ1	Q	19	23	Right-handed 310
Helix 83	AJ2	R	11	19	Right-handed alpha
Helix 84	AJ3	R	20	23	Right-handed 310
Helix 85	AJ4	S	11	18	Right-handed alpha
Helix 86	AJ5	S	19	23	Right-handed 310
Helix 87	AJ6	T	11	19	Right-handed alpha
Helix 88	AJ7	T	20	23	Right-handed 310
Helix 89	AJ8	U	11	19	Right-handed alpha
Helix 90	AJ9	U	20	23	Right-handed 310
Helix 91	AK1	V	11	19	Right-handed alpha
Helix 92	AK2	V	20	23	Right-handed 310
Helix 93	AK3	W	11	19	Right-handed alpha
Helix 94	AK4	W	20	23	Right-handed 310
Helix 95	AK5	X	11	19	Right-handed alpha
Helix 96	AK6	X	20	23	Right-handed 310

There are 24 sheets in PDB entry 9C8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	211	218	anti-parallel
Strand 3	A	106	115	anti-parallel
Strand 4	A	176	187	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	126	133	anti-parallel
Strand 4	A	139	147	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	211	218	anti-parallel
Strand 3	B	106	115	anti-parallel
Strand 4	B	176	187	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	126	133	anti-parallel
Strand 4	B	139	147	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	211	218	anti-parallel
Strand 3	C	106	115	anti-parallel
Strand 4	C	176	187	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	126	133	anti-parallel
Strand 4	C	139	147	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	211	218	anti-parallel
Strand 3	D	106	115	anti-parallel
Strand 4	D	176	187	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	126	133	anti-parallel
Strand 4	D	139	147	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	66	first strand
Strand 2	E	211	218	anti-parallel
Strand 3	E	106	115	anti-parallel
Strand 4	E	176	187	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	197	202	anti-parallel
Strand 3	E	126	133	anti-parallel
Strand 4	E	139	147	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	65	first strand
Strand 2	F	211	218	anti-parallel
Strand 3	F	106	115	anti-parallel
Strand 4	F	176	187	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	197	202	anti-parallel
Strand 3	F	126	133	anti-parallel
Strand 4	F	139	147	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	65	first strand
Strand 2	G	211	218	anti-parallel
Strand 3	G	106	115	anti-parallel
Strand 4	G	176	187	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	90	first strand
Strand 2	G	197	202	anti-parallel
Strand 3	G	126	133	anti-parallel
Strand 4	G	139	147	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	66	first strand
Strand 2	H	211	218	anti-parallel
Strand 3	H	106	115	anti-parallel
Strand 4	H	176	187	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	90	first strand
Strand 2	H	197	202	anti-parallel
Strand 3	H	126	133	anti-parallel
Strand 4	H	139	147	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	66	first strand
Strand 2	I	211	218	anti-parallel
Strand 3	I	106	115	anti-parallel
Strand 4	I	176	187	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	90	first strand
Strand 2	I	197	202	anti-parallel
Strand 3	I	126	133	anti-parallel
Strand 4	I	139	147	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	65	first strand
Strand 2	J	211	218	anti-parallel
Strand 3	J	106	115	anti-parallel
Strand 4	J	176	187	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	90	first strand
Strand 2	J	197	202	anti-parallel
Strand 3	J	126	133	anti-parallel
Strand 4	J	139	147	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	66	first strand
Strand 2	K	211	218	anti-parallel
Strand 3	K	106	115	anti-parallel
Strand 4	K	176	187	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	86	90	first strand
Strand 2	K	197	202	anti-parallel
Strand 3	K	126	133	anti-parallel
Strand 4	K	139	147	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	65	first strand
Strand 2	L	211	218	anti-parallel
Strand 3	L	106	115	anti-parallel
Strand 4	L	176	187	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	86	90	first strand
Strand 2	L	197	202	anti-parallel
Strand 3	L	126	133	anti-parallel
Strand 4	L	139	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8D