Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C8E entry

There are 11 chains in PDB entry 9C8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 58	ASN 229
B	PRO 58	ASN 229
C	PRO 58	ASN 229
D	PRO 58	ASN 229
E	PRO 58	ASN 229
F	PRO 58	ASN 229
G	PRO 58	ASN 229
H	PRO 58	ASN 229
I	PRO 58	ASN 229
J	PRO 58	ASN 229
K	PRO 58	ASN 229

There are 48 helices in PDB entry 9C8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	122	Right-handed alpha
Helix 2	AA2	A	153	164	Right-handed alpha
Helix 3	AA3	A	164	170	Right-handed alpha
Helix 4	AA4	A	221	223	Right-handed 310
Helix 5	AA5	A	224	229	Right-handed alpha
Helix 6	AA6	B	117	122	Right-handed alpha
Helix 7	AA7	B	153	164	Right-handed alpha
Helix 8	AA8	B	164	169	Right-handed alpha
Helix 9	AA9	B	221	229	Right-handed 310
Helix 10	AB1	C	117	122	Right-handed alpha
Helix 11	AB2	C	153	164	Right-handed alpha
Helix 12	AB3	C	164	169	Right-handed alpha
Helix 13	AB4	C	221	223	Right-handed 310
Helix 14	AB5	C	224	229	Right-handed alpha
Helix 15	AB6	D	117	122	Right-handed alpha
Helix 16	AB7	D	153	164	Right-handed alpha
Helix 17	AB8	D	164	169	Right-handed alpha
Helix 18	AB9	D	221	223	Right-handed 310
Helix 19	AC1	D	224	229	Right-handed alpha
Helix 20	AC2	E	117	122	Right-handed alpha
Helix 21	AC3	E	153	164	Right-handed alpha
Helix 22	AC4	E	164	169	Right-handed alpha
Helix 23	AC5	E	221	229	Right-handed 310
Helix 24	AC6	F	117	122	Right-handed alpha
Helix 25	AC7	F	153	164	Right-handed alpha
Helix 26	AC8	F	164	169	Right-handed alpha
Helix 27	AC9	F	221	223	Right-handed 310
Helix 28	AD1	F	224	229	Right-handed alpha
Helix 29	AD2	G	117	122	Right-handed alpha
Helix 30	AD3	G	153	164	Right-handed alpha
Helix 31	AD4	G	164	169	Right-handed alpha
Helix 32	AD5	G	221	229	Right-handed 310
Helix 33	AD6	H	117	122	Right-handed alpha
Helix 34	AD7	H	153	164	Right-handed alpha
Helix 35	AD8	H	164	170	Right-handed alpha
Helix 36	AD9	H	221	228	Right-handed 310
Helix 37	AE1	I	117	122	Right-handed alpha
Helix 38	AE2	I	153	164	Right-handed alpha
Helix 39	AE3	I	164	170	Right-handed alpha
Helix 40	AE4	I	221	229	Right-handed 310
Helix 41	AE5	J	117	122	Right-handed alpha
Helix 42	AE6	J	153	164	Right-handed alpha
Helix 43	AE7	J	164	169	Right-handed alpha
Helix 44	AE8	J	221	228	Right-handed 310
Helix 45	AE9	K	117	122	Right-handed alpha
Helix 46	AF1	K	153	164	Right-handed alpha
Helix 47	AF2	K	164	169	Right-handed alpha
Helix 48	AF3	K	221	229	Right-handed 310

There are 22 sheets in PDB entry 9C8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	211	218	anti-parallel
Strand 3	A	106	115	anti-parallel
Strand 4	A	176	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	126	133	anti-parallel
Strand 4	A	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	211	218	anti-parallel
Strand 3	B	105	115	anti-parallel
Strand 4	B	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	126	133	anti-parallel
Strand 4	B	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	66	first strand
Strand 2	C	211	218	anti-parallel
Strand 3	C	106	115	anti-parallel
Strand 4	C	176	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	126	133	anti-parallel
Strand 4	C	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	66	first strand
Strand 2	D	211	218	anti-parallel
Strand 3	D	106	115	anti-parallel
Strand 4	D	176	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	126	133	anti-parallel
Strand 4	D	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	66	first strand
Strand 2	E	211	218	anti-parallel
Strand 3	E	105	115	anti-parallel
Strand 4	E	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	197	202	anti-parallel
Strand 3	E	126	133	anti-parallel
Strand 4	E	141	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	66	first strand
Strand 2	F	211	218	anti-parallel
Strand 3	F	106	115	anti-parallel
Strand 4	F	176	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	197	203	anti-parallel
Strand 3	F	126	133	anti-parallel
Strand 4	F	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	66	first strand
Strand 2	G	211	218	anti-parallel
Strand 3	G	105	115	anti-parallel
Strand 4	G	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	90	first strand
Strand 2	G	197	202	anti-parallel
Strand 3	G	126	133	anti-parallel
Strand 4	G	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	66	first strand
Strand 2	H	211	218	anti-parallel
Strand 3	H	106	115	anti-parallel
Strand 4	H	176	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	90	first strand
Strand 2	H	197	203	anti-parallel
Strand 3	H	126	133	anti-parallel
Strand 4	H	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	66	first strand
Strand 2	I	212	218	anti-parallel
Strand 3	I	105	115	anti-parallel
Strand 4	I	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	90	first strand
Strand 2	I	197	202	anti-parallel
Strand 3	I	126	133	anti-parallel
Strand 4	I	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	66	first strand
Strand 2	J	211	218	anti-parallel
Strand 3	J	105	115	anti-parallel
Strand 4	J	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	90	first strand
Strand 2	J	197	202	anti-parallel
Strand 3	J	126	133	anti-parallel
Strand 4	J	139	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	66	first strand
Strand 2	K	211	218	anti-parallel
Strand 3	K	105	115	anti-parallel
Strand 4	K	176	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	86	90	first strand
Strand 2	K	197	203	anti-parallel
Strand 3	K	126	133	anti-parallel
Strand 4	K	139	147	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8E