Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C8F entry

There are 3 chains in PDB entry 9C8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 42GLY 269
B
 LEU 16GLN 248
C
 GLY 1GLN 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9C8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 57Right-handed 310
Helix 2
AA2
A
58 64Right-handed alpha
Helix 3
AA3
A
100 108Right-handed alpha
Helix 4
AA4
B
35 37Right-handed 310
Helix 5
AA5
B
43 47Right-handed 310
Helix 6
AA6
B
89 99Right-handed alpha
Helix 7
AA7
B
142 147Right-handed alpha
Helix 8
AA8
B
166 173Right-handed 310
Helix 9
AA9
C
43 48Right-handed alpha
Helix 10
AB1
C
63 67Right-handed 310
Helix 11
AB2
C
97 103Right-handed alpha
Helix 12
AB3
C
143 150Right-handed alpha
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There are 9 sheets in PDB entry 9C8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
234 251anti-parallel
Strand 3
A
110 124anti-parallel
Strand 4
A
193 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
110 124anti-parallel
Strand 3
A
234 251anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
170 174anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
102 112anti-parallel
Strand 4
B
226 239anti-parallel
Strand 5
B
64 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
123 126anti-parallel
Strand 4
B
175 177anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
210 218anti-parallel
Strand 3
C
69 71anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
210 218anti-parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
162 166anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
128 134anti-parallel
Strand 4
C
152 156anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 108first strand
Strand 2
C
225 227anti-parallel
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