Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C8H entry

There are 3 chains in PDB entry 9C8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 55LYS 267
B
 ASN 30ILE 246
C
 GLY 1LEU 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 9C8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 64Right-handed alpha
Helix 2
AA2
A
100 108Right-handed alpha
Helix 3
AA3
B
33 37Right-handed 310
Helix 4
AA4
B
83 87Right-handed 310
Helix 5
AA5
B
89 98Right-handed alpha
Helix 6
AA6
B
157 161Right-handed 310
Helix 7
AA7
B
166 173Right-handed 310
Helix 8
AA8
C
43 48Right-handed alpha
Helix 9
AA9
C
63 68Right-handed alpha
Helix 10
AB1
C
92 96Right-handed 310
Helix 11
AB2
C
97 104Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9C8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 76first strand
Strand 2
A
232 250anti-parallel
Strand 3
A
110 127anti-parallel
Strand 4
A
179 183anti-parallel
Strand 5
C
22 23parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 76first strand
Strand 2
A
232 250anti-parallel
Strand 3
C
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
168 173anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
227 242anti-parallel
Strand 3
B
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
227 242anti-parallel
Strand 3
B
99 112anti-parallel
Strand 4
B
185 190anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
207 213anti-parallel
Strand 4
B
122 128anti-parallel
Strand 5
B
175 177anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
210 214anti-parallel
Strand 3
C
113 118anti-parallel
Strand 4
C
162 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
210 214anti-parallel
Strand 3
C
113 118anti-parallel
Strand 4
C
217 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 85first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
128 133anti-parallel
Strand 4
C
151 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
223 225anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il