Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C8R entry

There are 3 chains in PDB entry 9C8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 26	GLY 541
B	LEU 26	GLY 541
C	ASP 25	VAL 543

There are 57 helices in PDB entry 9C8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	63	75	Right-handed alpha
Helix 4	AA4	A	103	109	Right-handed alpha
Helix 5	AA5	A	109	116	Right-handed alpha
Helix 6	AA6	A	128	132	Right-handed 310
Helix 7	AA7	A	137	154	Right-handed alpha
Helix 8	AA8	A	169	182	Right-handed alpha
Helix 9	AA9	A	194	206	Right-handed alpha
Helix 10	AB1	A	224	234	Right-handed alpha
Helix 11	AB2	A	262	268	Right-handed alpha
Helix 12	AB3	A	303	318	Right-handed alpha
Helix 13	AB4	A	334	341	Right-handed alpha
Helix 14	AB5	A	342	349	Right-handed alpha
Helix 15	AB6	A	365	375	Right-handed alpha
Helix 16	AB7	A	382	393	Right-handed alpha
Helix 17	AB8	A	416	426	Right-handed alpha
Helix 18	AB9	A	440	444	Right-handed 310
Helix 19	AC1	A	507	516	Right-handed alpha
Helix 20	AC2	B	30	34	Right-handed 310
Helix 21	AC3	B	47	59	Right-handed alpha
Helix 22	AC4	B	62	75	Right-handed alpha
Helix 23	AC5	B	103	109	Right-handed alpha
Helix 24	AC6	B	109	114	Right-handed alpha
Helix 25	AC7	B	128	132	Right-handed 310
Helix 26	AC8	B	137	154	Right-handed alpha
Helix 27	AC9	B	169	182	Right-handed alpha
Helix 28	AD1	B	194	206	Right-handed alpha
Helix 29	AD2	B	224	234	Right-handed alpha
Helix 30	AD3	B	262	268	Right-handed alpha
Helix 31	AD4	B	303	318	Right-handed alpha
Helix 32	AD5	B	334	341	Right-handed alpha
Helix 33	AD6	B	342	348	Right-handed alpha
Helix 34	AD7	B	365	375	Right-handed alpha
Helix 35	AD8	B	382	393	Right-handed alpha
Helix 36	AD9	B	416	426	Right-handed alpha
Helix 37	AE1	B	440	444	Right-handed 310
Helix 38	AE2	B	507	516	Right-handed alpha
Helix 39	AE3	C	30	34	Right-handed 310
Helix 40	AE4	C	47	56	Right-handed alpha
Helix 41	AE5	C	57	59	Right-handed 310
Helix 42	AE6	C	63	75	Right-handed alpha
Helix 43	AE7	C	103	109	Right-handed alpha
Helix 44	AE8	C	109	116	Right-handed alpha
Helix 45	AE9	C	128	132	Right-handed 310
Helix 46	AF1	C	137	154	Right-handed alpha
Helix 47	AF2	C	169	182	Right-handed alpha
Helix 48	AF3	C	194	206	Right-handed alpha
Helix 49	AF4	C	224	234	Right-handed alpha
Helix 50	AF5	C	262	267	Right-handed alpha
Helix 51	AF6	C	303	317	Right-handed alpha
Helix 52	AF7	C	334	341	Right-handed alpha
Helix 53	AF8	C	342	348	Right-handed alpha
Helix 54	AF9	C	365	375	Right-handed alpha
Helix 55	AG1	C	382	392	Right-handed alpha
Helix 56	AG2	C	416	427	Right-handed alpha
Helix 57	AG3	C	507	516	Right-handed alpha

There are 18 sheets in PDB entry 9C8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	95	96	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	278	279	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	351	355	parallel
Strand 4	A	325	328	parallel
Strand 5	A	378	381	parallel
Strand 6	A	407	411	parallel
Strand 7	A	433	437	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	241	245	parallel
Strand 3	A	209	213	parallel
Strand 4	A	161	165	parallel
Strand 5	A	185	189	parallel
Strand 6	A	285	288	parallel
Strand 7	A	298	301	anti-parallel
Strand 8	A	503	504	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	221	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	523	531	anti-parallel
Strand 4	A	537	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	95	96	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	278	279	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	120	125	anti-parallel
Strand 3	B	351	355	parallel
Strand 4	B	325	328	parallel
Strand 5	B	378	381	parallel
Strand 6	B	407	411	parallel
Strand 7	B	433	437	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	241	245	parallel
Strand 3	B	209	213	parallel
Strand 4	B	161	165	parallel
Strand 5	B	185	189	parallel
Strand 6	B	285	288	parallel
Strand 7	B	298	301	anti-parallel
Strand 8	B	503	504	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	221	223	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	474	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	523	531	anti-parallel
Strand 4	B	537	540	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	95	96	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	278	279	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	351	355	parallel
Strand 4	C	325	328	parallel
Strand 5	C	378	381	parallel
Strand 6	C	407	411	parallel
Strand 7	C	433	437	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	241	245	parallel
Strand 3	C	209	213	parallel
Strand 4	C	161	165	parallel
Strand 5	C	185	188	parallel
Strand 6	C	283	288	parallel
Strand 7	C	298	302	anti-parallel
Strand 8	C	503	504	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	221	223	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	474	first strand
Strand 2	C	487	493	anti-parallel
Strand 3	C	523	531	anti-parallel
Strand 4	C	537	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8R