Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C8U entry

There are 6 chains in PDB entry 9C8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 80	GLU 689
C	SER 75	ARG 441
D	ASP 3	ASN 410
A	GLU 22	VAL 742
E	PRO 139	LEU 169
F	SER 182	ARG 295

There are 38 helices in PDB entry 9C8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	80	104	Right-handed alpha
Helix 2	AA2	B	111	115	Right-handed 310
Helix 3	AA3	B	134	143	Right-handed alpha
Helix 4	AA4	B	459	471	Right-handed alpha
Helix 5	AA5	B	502	508	Right-handed 310
Helix 6	AA6	B	539	544	Right-handed 310
Helix 7	AA7	B	575	579	Right-handed 310
Helix 8	AA8	B	589	602	Right-handed alpha
Helix 9	AA9	B	607	625	Right-handed alpha
Helix 10	AB1	B	628	643	Right-handed alpha
Helix 11	AB2	B	643	651	Right-handed alpha
Helix 12	AB3	B	652	666	Right-handed alpha
Helix 13	AB4	B	670	689	Right-handed alpha
Helix 14	AB5	C	128	130	Right-handed 310
Helix 15	AB6	C	267	279	Right-handed alpha
Helix 16	AB7	D	4	27	Right-handed alpha
Helix 17	AB8	D	28	30	Right-handed 310
Helix 18	AB9	D	348	350	Right-handed 310
Helix 19	AC1	D	355	362	Right-handed alpha
Helix 20	AC2	D	405	410	Right-handed alpha
Helix 21	AC3	A	23	61	Right-handed alpha
Helix 22	AC4	A	273	278	Right-handed alpha
Helix 23	AC5	A	278	284	Right-handed alpha
Helix 24	AC6	A	303	307	Right-handed 310
Helix 25	AC7	A	335	345	Right-handed alpha
Helix 26	AC8	A	438	453	Right-handed alpha
Helix 27	AC9	A	455	463	Right-handed alpha
Helix 28	AD1	A	467	479	Right-handed alpha
Helix 29	AD2	A	539	544	Right-handed alpha
Helix 30	AD3	A	576	581	Right-handed alpha
Helix 31	AD4	A	609	614	Right-handed alpha
Helix 32	AD5	A	652	664	Right-handed alpha
Helix 33	AD6	A	687	691	Right-handed 310
Helix 34	AD7	A	737	742	Right-handed alpha
Helix 35	AD8	E	142	149	Right-handed alpha
Helix 36	AD9	F	192	210	Right-handed alpha
Helix 37	AE1	F	255	262	Right-handed alpha
Helix 38	AE2	F	276	281	Right-handed 310

There are 24 sheets in PDB entry 9C8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	206	first strand
Strand 2	B	185	192	anti-parallel
Strand 3	B	245	253	anti-parallel
Strand 4	B	297	300	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	443	first strand
Strand 2	B	428	432	anti-parallel
Strand 3	B	485	491	parallel
Strand 4	B	474	478	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	560	first strand
Strand 2	B	525	530	anti-parallel
Strand 3	D	32	39	anti-parallel
Strand 4	D	398	404	anti-parallel
Strand 5	D	390	394	anti-parallel
Strand 6	D	377	382	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	87	first strand
Strand 2	C	434	439	anti-parallel
Strand 3	C	424	429	anti-parallel
Strand 4	C	413	418	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	101	first strand
Strand 2	C	111	117	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	132	139	anti-parallel
Strand 5	A	99	100	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	172	176	anti-parallel
Strand 4	C	181	186	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	198	first strand
Strand 2	C	205	210	anti-parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	224	228	anti-parallel
Strand 5	C	292	293	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	244	first strand
Strand 2	C	250	255	anti-parallel
Strand 3	C	260	264	anti-parallel
Strand 4	C	300	301	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	315	first strand
Strand 2	C	318	323	anti-parallel
Strand 3	C	327	333	anti-parallel
Strand 4	C	350	357	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	376	379	anti-parallel
Strand 3	C	386	390	anti-parallel
Strand 4	C	402	404	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	54	first strand
Strand 2	D	62	68	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	117	119	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	122	123	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	149	153	anti-parallel
Strand 3	D	172	173	anti-parallel
Strand 4	D	216	217	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	193	197	anti-parallel
Strand 3	D	202	205	anti-parallel
Strand 4	D	221	223	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	235	first strand
Strand 2	D	242	247	anti-parallel
Strand 3	D	251	256	anti-parallel
Strand 4	D	267	269	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	281	first strand
Strand 2	D	288	293	anti-parallel
Strand 3	D	298	302	anti-parallel
Strand 4	D	312	313	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	325	first strand
Strand 2	D	332	337	anti-parallel
Strand 3	D	342	346	anti-parallel
Strand 4	D	366	370	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	94	97	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	685	686	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	649	651	parallel
Strand 3	A	679	681	anti-parallel
Strand 4	A	671	673	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	623	first strand
Strand 2	A	629	633	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	645	first strand
Strand 2	A	710	717	anti-parallel
Strand 3	A	700	707	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	223	first strand
Strand 2	F	264	268	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	241	first strand
Strand 2	F	252	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C8U