Analysis of interatomic Contacts of Structural Units in PDB entry:
9C96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C96 entry

There are 4 chains in PDB entry 9C96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3TRP 274
B
 ILE 1ASP 98
C
 VAL 15THR 376
D
 LYS 1VAL 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9C96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 73Right-handed alpha
Helix 2
AA2
A
137 139Right-handed 310
Helix 3
AA3
A
140 151Right-handed alpha
Helix 4
AA4
A
151 175Right-handed alpha
Helix 5
AA5
C
253 257Right-handed 310
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There are 11 sheets in PDB entry 9C96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
4 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
199 208anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
228 230anti-parallel
Strand 5
C
335 337anti-parallel
Strand 6
C
342 349anti-parallel
Strand 7
C
297 305anti-parallel
Strand 8
C
284 288anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
241 249anti-parallel
Strand 3
A
228 230anti-parallel
Strand 4
C
335 337anti-parallel
Strand 5
C
342 349anti-parallel
Strand 6
C
330 331anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
270 272anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 67anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
21 30anti-parallel
Strand 4
B
69 70anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
37 41anti-parallel
Strand 3
B
78 82anti-parallel
Strand 4
B
91 94anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
37 42parallel
Strand 3
C
16 20anti-parallel
Strand 4
C
99 104parallel
Strand 5
C
122 127anti-parallel
Strand 6
C
133 135anti-parallel
Strand 7
C
170 173anti-parallel
Strand 8
C
192 194anti-parallel
Strand 9
C
243 244anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 182first strand
Strand 2
C
274 280parallel
Strand 3
C
258 265anti-parallel
Strand 4
C
203 210anti-parallel
Strand 5
C
213 221anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 188first strand
Strand 2
C
248 249anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
311 317anti-parallel
Strand 3
C
358 364anti-parallel
Strand 4
C
372 375anti-parallel
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