Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C9D entry

There are 5 chains in PDB entry 9C9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0VAL 269
B
 MET 0ASP 98
D
 GLY 1PRO 200
E
 ASN 1ALA 244
F
 GLY 1LEU 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9C9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
55 85Right-handed alpha
Helix 3
AA3
A
133 146Right-handed alpha
Helix 4
AA4
A
146 159Right-handed alpha
Helix 5
AA5
A
159 172Right-handed alpha
Helix 6
AA6
A
172 177Right-handed alpha
Helix 7
AA7
D
79 83Right-handed 310
Helix 8
AA8
E
82 86Right-handed 310
Helix 9
AA9
E
117 121Right-handed 310
Helix 10
AB1
E
132 140Right-handed alpha
Helix 11
AB2
E
199 203Right-handed alpha
Helix 12
AB3
F
51 56Right-handed alpha
Helix 13
AB4
F
66 70Right-handed 310
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There are 23 sheets in PDB entry 9C9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
91 100anti-parallel
Strand 6
A
106 114anti-parallel
Strand 7
A
117 123anti-parallel
Strand 8
A
128 131anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 192first strand
Strand 2
A
195 205anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
226 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 192first strand
Strand 2
A
195 205anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
231 232anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
264 268anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
60 65anti-parallel
Strand 5
D
53 57anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 13first strand
Strand 2
D
103 108parallel
Strand 3
D
84 91anti-parallel
Strand 4
D
32 37anti-parallel
Strand 5
D
44 49anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 13first strand
Strand 2
D
103 108parallel
Strand 3
D
84 91anti-parallel
Strand 4
D
97 99anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 120first strand
Strand 2
D
130 135anti-parallel
Strand 3
D
166 175anti-parallel
Strand 4
D
151 153anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 120first strand
Strand 2
D
130 135anti-parallel
Strand 3
D
166 175anti-parallel
Strand 4
D
157 161anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 123first strand
Strand 2
E
125 130anti-parallel
Strand 3
E
141 151anti-parallel
Strand 4
E
189 198anti-parallel
Strand 5
E
171 173anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 123first strand
Strand 2
E
125 130anti-parallel
Strand 3
E
141 151anti-parallel
Strand 4
E
189 198anti-parallel
Strand 5
E
178 179anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
73 78anti-parallel
Strand 4
E
65 70anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
110 115parallel
Strand 3
E
88 94anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
44 51anti-parallel
Strand 6
E
54 57anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
110 115parallel
Strand 3
E
88 94anti-parallel
Strand 4
E
105 106anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 167first strand
Strand 2
E
156 162anti-parallel
Strand 3
E
208 215anti-parallel
Strand 4
E
234 241anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
7 11first strand
Strand 2
F
22 27anti-parallel
Strand 3
F
59 62anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 17first strand
Strand 2
F
90 95parallel
Strand 3
F
71 78anti-parallel
Strand 4
F
34 39anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 105first strand
Strand 2
F
117 122anti-parallel
Strand 3
F
157 160anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
143 145first strand
Strand 2
F
129 134anti-parallel
Strand 3
F
170 177anti-parallel
Strand 4
F
180 184anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
143 145first strand
Strand 2
F
129 134anti-parallel
Strand 3
F
170 177anti-parallel
Strand 4
F
191 192anti-parallel
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