Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C9E entry

There is 1 chain in PDB entry 9C9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ALA 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9C9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
40 57Right-handed alpha
Helix 3
AA3
A
63 75Right-handed alpha
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
89 92Right-handed 310
Helix 6
AA6
A
97 106Right-handed alpha
Helix 7
AA7
A
118 128Right-handed alpha
Helix 8
AA8
A
139 143Right-handed alpha
Helix 9
AA9
A
149 160Right-handed alpha
Helix 10
AB1
A
162 164Right-handed 310
Helix 11
AB2
A
174 183Right-handed alpha
Helix 12
AB3
A
212 219Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9C9E.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
110 115parallel
Strand 3
A
18 21parallel
Strand 4
A
166 170parallel
Strand 5
A
185 189parallel
Strand 6
A
205 207parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il