Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C9F entry

There are 4 chains in PDB entry 9C9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 6ALA 299
B
 SER -1GLN 298
C
 TRP 6GLN 298
D
 HIS 0GLY 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9C9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 48Right-handed 310
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
84 99Right-handed alpha
Helix 4
AA4
A
110 123Right-handed alpha
Helix 5
AA5
A
137 144Right-handed alpha
Helix 6
AA6
A
146 153Right-handed alpha
Helix 7
AA7
A
154 159Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
173 184Right-handed alpha
Helix 10
AB1
A
193 205Right-handed alpha
Helix 11
AB2
A
208 221Right-handed alpha
Helix 12
AB3
A
222 235Right-handed alpha
Helix 13
AB4
A
250 256Right-handed alpha
Helix 14
AB5
A
257 266Right-handed alpha
Helix 15
AB6
A
279 284Right-handed alpha
Helix 16
AB7
A
284 299Right-handed alpha
Helix 17
AB8
B
43 49Right-handed 310
Helix 18
AB9
B
50 55Right-handed alpha
Helix 19
AC1
B
84 99Right-handed alpha
Helix 20
AC2
B
110 123Right-handed alpha
Helix 21
AC3
B
137 144Right-handed alpha
Helix 22
AC4
B
146 153Right-handed alpha
Helix 23
AC5
B
154 159Right-handed alpha
Helix 24
AC6
B
164 173Right-handed alpha
Helix 25
AC7
B
173 184Right-handed alpha
Helix 26
AC8
B
193 205Right-handed alpha
Helix 27
AC9
B
208 221Right-handed alpha
Helix 28
AD1
B
222 234Right-handed alpha
Helix 29
AD2
B
250 256Right-handed alpha
Helix 30
AD3
B
257 266Right-handed alpha
Helix 31
AD4
B
279 284Right-handed alpha
Helix 32
AD5
B
284 298Right-handed alpha
Helix 33
AD6
C
43 49Right-handed 310
Helix 34
AD7
C
50 55Right-handed alpha
Helix 35
AD8
C
84 99Right-handed alpha
Helix 36
AD9
C
110 123Right-handed alpha
Helix 37
AE1
C
137 144Right-handed alpha
Helix 38
AE2
C
146 153Right-handed alpha
Helix 39
AE3
C
154 159Right-handed alpha
Helix 40
AE4
C
164 173Right-handed alpha
Helix 41
AE5
C
173 184Right-handed alpha
Helix 42
AE6
C
193 205Right-handed alpha
Helix 43
AE7
C
208 221Right-handed alpha
Helix 44
AE8
C
222 235Right-handed alpha
Helix 45
AE9
C
250 256Right-handed alpha
Helix 46
AF1
C
257 266Right-handed alpha
Helix 47
AF2
C
279 284Right-handed alpha
Helix 48
AF3
C
284 298Right-handed alpha
Helix 49
AF4
D
43 49Right-handed 310
Helix 50
AF5
D
50 56Right-handed alpha
Helix 51
AF6
D
84 99Right-handed alpha
Helix 52
AF7
D
110 123Right-handed alpha
Helix 53
AF8
D
137 144Right-handed alpha
Helix 54
AF9
D
146 153Right-handed alpha
Helix 55
AG1
D
154 159Right-handed alpha
Helix 56
AG2
D
164 173Right-handed alpha
Helix 57
AG3
D
173 184Right-handed alpha
Helix 58
AG4
D
193 205Right-handed alpha
Helix 59
AG5
D
208 221Right-handed alpha
Helix 60
AG6
D
222 234Right-handed alpha
Helix 61
AG7
D
250 256Right-handed alpha
Helix 62
AG8
D
257 266Right-handed alpha
Helix 63
AG9
D
279 284Right-handed alpha
Helix 64
AH1
D
284 298Right-handed alpha
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There are 4 sheets in PDB entry 9C9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
21 29anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
33 37parallel
Strand 5
A
104 109parallel
Strand 6
A
127 133parallel
Strand 7
A
242 247parallel
Strand 8
A
269 274parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 18first strand
Strand 2
B
21 29anti-parallel
Strand 3
B
59 63anti-parallel
Strand 4
B
33 37parallel
Strand 5
B
104 109parallel
Strand 6
B
127 133parallel
Strand 7
B
242 247parallel
Strand 8
B
269 274parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 18first strand
Strand 2
C
21 29anti-parallel
Strand 3
C
59 63anti-parallel
Strand 4
C
33 37parallel
Strand 5
C
104 109parallel
Strand 6
C
127 133parallel
Strand 7
C
242 247parallel
Strand 8
C
269 274parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 18first strand
Strand 2
D
21 29anti-parallel
Strand 3
D
59 63anti-parallel
Strand 4
D
33 37parallel
Strand 5
D
104 109parallel
Strand 6
D
127 133parallel
Strand 7
D
242 247parallel
Strand 8
D
269 274parallel
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