Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C9P entry

There are 4 chains in PDB entry 9C9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 1366
B
 U 7 U 98
C
 C 1 C 29
D
 T 23 G 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9C9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
104 106Right-handed 310
Helix 4
AA4
A
121 132Right-handed alpha
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
175 179Right-handed 310
Helix 8
AA8
A
180 196Right-handed alpha
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
236 247Right-handed alpha
Helix 11
AB2
A
272 281Right-handed alpha
Helix 12
AB3
A
286 303Right-handed alpha
Helix 13
AB4
A
315 343Right-handed alpha
Helix 14
AB5
A
346 352Right-handed alpha
Helix 15
AB6
A
358 364Right-handed alpha
Helix 16
AB7
A
368 383Right-handed alpha
Helix 17
AB8
A
386 395Right-handed alpha
Helix 18
AB9
A
404 410Right-handed 310
Helix 19
AC1
A
411 427Right-handed alpha
Helix 20
AC2
A
430 436Right-handed alpha
Helix 21
AC3
A
436 446Right-handed alpha
Helix 22
AC4
A
477 481Right-handed 310
Helix 23
AC5
A
483 494Right-handed alpha
Helix 24
AC6
A
512 522Right-handed alpha
Helix 25
AC7
A
525 529Right-handed 310
Helix 26
AC8
A
541 552Right-handed alpha
Helix 27
AC9
A
560 565Right-handed alpha
Helix 28
AD1
A
592 602Right-handed alpha
Helix 29
AD2
A
609 611Right-handed 310
Helix 30
AD3
A
612 626Right-handed alpha
Helix 31
AD4
A
628 636Right-handed alpha
Helix 32
AD5
A
637 640Right-handed 310
Helix 33
AD6
A
644 652Right-handed alpha
Helix 34
AD7
A
679 683Right-handed alpha
Helix 35
AD8
A
691 699Right-handed alpha
Helix 36
AD9
A
703 713Right-handed alpha
Helix 37
AE1
A
715 717Right-handed 310
Helix 38
AE2
A
718 726Right-handed alpha
Helix 39
AE3
A
730 751Right-handed alpha
Helix 40
AE4
A
767 776Right-handed alpha
Helix 41
AE5
A
778 792Right-handed alpha
Helix 42
AE6
A
793 799Right-handed 310
Helix 43
AE7
A
802 807Right-handed alpha
Helix 44
AE8
A
808 817Right-handed alpha
Helix 45
AE9
A
872 889Right-handed alpha
Helix 46
AF1
A
893 901Right-handed alpha
Helix 47
AF2
A
909 922Right-handed alpha
Helix 48
AF3
A
925 940Right-handed alpha
Helix 49
AF4
A
959 970Right-handed alpha
Helix 50
AF5
A
981 1001Right-handed alpha
Helix 51
AF6
A
1004 1009Right-handed alpha
Helix 52
AF7
A
1017 1022Right-handed alpha
Helix 53
AF8
A
1042 1047Right-handed 310
Helix 54
AF9
A
1077 1088Right-handed alpha
Helix 55
AG1
A
1127 1132Right-handed alpha
Helix 56
AG2
A
1170 1177Right-handed alpha
Helix 57
AG3
A
1177 1185Right-handed alpha
Helix 58
AG4
A
1229 1241Right-handed alpha
Helix 59
AG5
A
1248 1261Right-handed alpha
Helix 60
AG6
A
1264 1281Right-handed alpha
Helix 61
AG7
A
1283 1297Right-handed alpha
Helix 62
AG8
A
1301 1313Right-handed alpha
Helix 63
AG9
A
1340 1344Right-handed 310
Helix 64
AH1
A
1363 1365Right-handed 310
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There are 7 sheets in PDB entry 9C9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 761parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1204anti-parallel
Strand 6
A
1212 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
659 663anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1167first strand
Strand 2
A
1139 1150anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il