Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C9Q entry

There are 2 chains in PDB entry 9C9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1001ILE 1476
B
 MET 997ILE 1476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9C9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1002 1015Right-handed alpha
Helix 2
AA2
A
1018 1027Right-handed alpha
Helix 3
AA3
A
1033 1054Right-handed alpha
Helix 4
AA4
A
1092 1103Right-handed alpha
Helix 5
AA5
A
1145 1164Right-handed alpha
Helix 6
AA6
A
1164 1169Right-handed alpha
Helix 7
AA7
A
1179 1189Right-handed alpha
Helix 8
AA8
A
1192 1194Right-handed 310
Helix 9
AA9
A
1195 1204Right-handed alpha
Helix 10
AB1
A
1212 1222Right-handed alpha
Helix 11
AB2
A
1228 1237Right-handed alpha
Helix 12
AB3
A
1243 1256Right-handed alpha
Helix 13
AB4
A
1260 1281Right-handed alpha
Helix 14
AB5
A
1296 1301Right-handed 310
Helix 15
AB6
A
1324 1330Right-handed alpha
Helix 16
AB7
A
1350 1356Right-handed alpha
Helix 17
AB8
A
1378 1382Right-handed 310
Helix 18
AB9
A
1393 1398Right-handed alpha
Helix 19
AC1
A
1399 1411Right-handed alpha
Helix 20
AC2
A
1423 1431Right-handed alpha
Helix 21
AC3
A
1467 1474Right-handed alpha
Helix 22
AC4
B
1002 1015Right-handed alpha
Helix 23
AC5
B
1018 1026Right-handed alpha
Helix 24
AC6
B
1033 1054Right-handed alpha
Helix 25
AC7
B
1092 1103Right-handed alpha
Helix 26
AC8
B
1145 1164Right-handed alpha
Helix 27
AC9
B
1164 1169Right-handed alpha
Helix 28
AD1
B
1179 1189Right-handed alpha
Helix 29
AD2
B
1192 1194Right-handed 310
Helix 30
AD3
B
1195 1204Right-handed alpha
Helix 31
AD4
B
1212 1222Right-handed alpha
Helix 32
AD5
B
1228 1237Right-handed alpha
Helix 33
AD6
B
1243 1255Right-handed alpha
Helix 34
AD7
B
1260 1281Right-handed alpha
Helix 35
AD8
B
1296 1301Right-handed 310
Helix 36
AD9
B
1324 1331Right-handed alpha
Helix 37
AE1
B
1350 1356Right-handed alpha
Helix 38
AE2
B
1378 1382Right-handed 310
Helix 39
AE3
B
1393 1398Right-handed alpha
Helix 40
AE4
B
1399 1411Right-handed alpha
Helix 41
AE5
B
1423 1431Right-handed alpha
Helix 42
AE6
B
1467 1476Right-handed alpha
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There are 6 sheets in PDB entry 9C9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1058first strand
Strand 2
A
1111 1120parallel
Strand 3
A
1129 1140anti-parallel
Strand 4
A
1343 1349anti-parallel
Strand 5
A
1316 1323anti-parallel
Strand 6
A
1304 1310anti-parallel
Strand 7
A
1172 1178anti-parallel
Strand 8
A
1286 1289parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1065 1066first strand
Strand 2
A
1085 1087anti-parallel
Strand 3
A
1077 1079anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1415 1417first strand
Strand 2
A
1387 1391parallel
Strand 3
A
1438 1443parallel
Strand 4
A
1447 1452anti-parallel
Strand 5
A
1461 1464anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1057 1058first strand
Strand 2
B
1111 1120parallel
Strand 3
B
1129 1140anti-parallel
Strand 4
B
1343 1349anti-parallel
Strand 5
B
1316 1323anti-parallel
Strand 6
B
1304 1310anti-parallel
Strand 7
B
1172 1178anti-parallel
Strand 8
B
1286 1289parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1065 1066first strand
Strand 2
B
1085 1087anti-parallel
Strand 3
B
1077 1079anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1415 1417first strand
Strand 2
B
1387 1390parallel
Strand 3
B
1438 1443parallel
Strand 4
B
1447 1452anti-parallel
Strand 5
B
1461 1464anti-parallel
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