Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C9R entry

There are 2 chains in PDB entry 9C9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1001ILE 1476
B
 ASP 999ILE 1476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9C9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1002 1013Right-handed alpha
Helix 2
AA2
A
1018 1025Right-handed alpha
Helix 3
AA3
A
1033 1054Right-handed alpha
Helix 4
AA4
A
1091 1103Right-handed alpha
Helix 5
AA5
A
1145 1164Right-handed alpha
Helix 6
AA6
A
1179 1189Right-handed alpha
Helix 7
AA7
A
1192 1194Right-handed 310
Helix 8
AA8
A
1195 1204Right-handed alpha
Helix 9
AA9
A
1212 1222Right-handed alpha
Helix 10
AB1
A
1228 1237Right-handed alpha
Helix 11
AB2
A
1243 1255Right-handed alpha
Helix 12
AB3
A
1260 1281Right-handed alpha
Helix 13
AB4
A
1296 1300Right-handed 310
Helix 14
AB5
A
1324 1330Right-handed alpha
Helix 15
AB6
A
1350 1355Right-handed alpha
Helix 16
AB7
A
1378 1382Right-handed 310
Helix 17
AB8
A
1393 1398Right-handed alpha
Helix 18
AB9
A
1399 1411Right-handed alpha
Helix 19
AC1
A
1423 1431Right-handed alpha
Helix 20
AC2
A
1467 1475Right-handed alpha
Helix 21
AC3
B
1002 1013Right-handed alpha
Helix 22
AC4
B
1018 1025Right-handed alpha
Helix 23
AC5
B
1033 1054Right-handed alpha
Helix 24
AC6
B
1091 1103Right-handed alpha
Helix 25
AC7
B
1145 1164Right-handed alpha
Helix 26
AC8
B
1164 1169Right-handed alpha
Helix 27
AC9
B
1179 1189Right-handed alpha
Helix 28
AD1
B
1192 1194Right-handed 310
Helix 29
AD2
B
1195 1204Right-handed alpha
Helix 30
AD3
B
1212 1222Right-handed alpha
Helix 31
AD4
B
1228 1237Right-handed alpha
Helix 32
AD5
B
1243 1255Right-handed alpha
Helix 33
AD6
B
1259 1281Right-handed alpha
Helix 34
AD7
B
1296 1301Right-handed 310
Helix 35
AD8
B
1324 1332Right-handed alpha
Helix 36
AD9
B
1350 1356Right-handed alpha
Helix 37
AE1
B
1378 1382Right-handed 310
Helix 38
AE2
B
1393 1398Right-handed alpha
Helix 39
AE3
B
1399 1410Right-handed alpha
Helix 40
AE4
B
1423 1431Right-handed alpha
Helix 41
AE5
B
1467 1474Right-handed alpha
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There are 6 sheets in PDB entry 9C9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1058first strand
Strand 2
A
1111 1120parallel
Strand 3
A
1129 1140anti-parallel
Strand 4
A
1343 1349anti-parallel
Strand 5
A
1316 1323anti-parallel
Strand 6
A
1304 1310anti-parallel
Strand 7
A
1172 1178anti-parallel
Strand 8
A
1286 1289parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1065 1066first strand
Strand 2
A
1085 1087anti-parallel
Strand 3
A
1077 1079anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1415 1417first strand
Strand 2
A
1387 1391parallel
Strand 3
A
1438 1443parallel
Strand 4
A
1447 1452anti-parallel
Strand 5
A
1461 1464anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1057 1058first strand
Strand 2
B
1111 1120parallel
Strand 3
B
1129 1140anti-parallel
Strand 4
B
1343 1349anti-parallel
Strand 5
B
1316 1323anti-parallel
Strand 6
B
1304 1310anti-parallel
Strand 7
B
1172 1178anti-parallel
Strand 8
B
1286 1289parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1065 1066first strand
Strand 2
B
1085 1087anti-parallel
Strand 3
B
1077 1079anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1415 1417first strand
Strand 2
B
1387 1391parallel
Strand 3
B
1438 1443parallel
Strand 4
B
1447 1452anti-parallel
Strand 5
B
1461 1464anti-parallel
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