Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C9W entry

There are 8 chains in PDB entry 9C9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 0	PHE 611
B	MET 1	TRP 161
C	VAL 0	SER 335
C	PRO 337	PHE 611
D	MET 1	TRP 161
E	C 2	A 24
F	A 1	C 19
L	G 1	G 42

There are 56 helices in PDB entry 9C9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	78	83	Right-handed alpha
Helix 4	AA4	A	98	106	Right-handed alpha
Helix 5	AA5	A	119	134	Right-handed alpha
Helix 6	AA6	A	135	137	Right-handed 310
Helix 7	AA7	A	156	166	Right-handed alpha
Helix 8	AA8	A	173	200	Right-handed alpha
Helix 9	AA9	A	217	235	Right-handed alpha
Helix 10	AB1	A	268	277	Right-handed alpha
Helix 11	AB2	A	302	312	Right-handed alpha
Helix 12	AB3	A	317	332	Right-handed alpha
Helix 13	AB4	A	349	356	Right-handed alpha
Helix 14	AB5	A	364	372	Right-handed alpha
Helix 15	AB6	A	402	419	Right-handed alpha
Helix 16	AB7	A	450	455	Right-handed 310
Helix 17	AB8	A	495	507	Right-handed alpha
Helix 18	AB9	A	513	524	Right-handed alpha
Helix 19	AC1	A	538	552	Right-handed alpha
Helix 20	AC2	A	559	568	Right-handed alpha
Helix 21	AC3	A	577	598	Right-handed alpha
Helix 22	AC4	A	600	611	Right-handed alpha
Helix 23	AC5	B	2	13	Right-handed alpha
Helix 24	AC6	B	17	24	Right-handed alpha
Helix 25	AC7	B	33	41	Right-handed alpha
Helix 26	AC8	B	44	49	Right-handed alpha
Helix 27	AC9	C	10	23	Right-handed alpha
Helix 28	AD1	C	68	73	Right-handed 310
Helix 29	AD2	C	77	82	Right-handed 310
Helix 30	AD3	C	93	96	Right-handed 310
Helix 31	AD4	C	97	105	Right-handed alpha
Helix 32	AD5	C	122	134	Right-handed alpha
Helix 33	AD6	C	156	166	Right-handed alpha
Helix 34	AD7	C	171	204	Right-handed alpha
Helix 35	AD8	C	205	208	Right-handed 310
Helix 36	AD9	C	217	234	Right-handed alpha
Helix 37	AE1	C	266	279	Right-handed alpha
Helix 38	AE2	C	302	315	Right-handed alpha
Helix 39	AE3	C	317	332	Right-handed alpha
Helix 40	AE4	C	349	357	Right-handed alpha
Helix 41	AE5	C	363	374	Right-handed alpha
Helix 42	AE6	C	397	401	Right-handed 310
Helix 43	AE7	C	403	420	Right-handed alpha
Helix 44	AE8	C	451	455	Right-handed 310
Helix 45	AE9	C	456	460	Right-handed 310
Helix 46	AF1	C	495	505	Right-handed alpha
Helix 47	AF2	C	512	524	Right-handed alpha
Helix 48	AF3	C	538	552	Right-handed alpha
Helix 49	AF4	C	553	556	Right-handed 310
Helix 50	AF5	C	559	573	Right-handed alpha
Helix 51	AF6	C	577	599	Right-handed alpha
Helix 52	AF7	C	600	611	Right-handed alpha
Helix 53	AF8	D	2	12	Right-handed alpha
Helix 54	AF9	D	17	25	Right-handed alpha
Helix 55	AG1	D	32	43	Right-handed alpha
Helix 56	AG2	D	44	49	Right-handed alpha

There are 11 sheets in PDB entry 9C9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	38	41	anti-parallel
Strand 3	A	50	56	anti-parallel
Strand 4	A	2	8	parallel
Strand 5	A	111	114	parallel
Strand 6	A	147	149	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	247	first strand
Strand 2	A	478	484	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	295	first strand
Strand 2	A	424	435	anti-parallel
Strand 3	A	438	447	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	133	134	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	106	110	parallel
Strand 3	B	95	100	anti-parallel
Strand 4	B	69	78	anti-parallel
Strand 5	B	127	129	anti-parallel
Strand 6	B	147	149	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	37	45	anti-parallel
Strand 3	C	48	56	anti-parallel
Strand 4	C	3	8	parallel
Strand 5	C	111	115	parallel
Strand 6	C	147	149	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	87	90	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	239	247	anti-parallel
Strand 3	C	475	487	anti-parallel
Strand 4	C	282	288	anti-parallel
Strand 5	C	425	434	anti-parallel
Strand 6	C	440	449	anti-parallel
Strand 7	C	258	259	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	239	247	anti-parallel
Strand 3	C	475	487	anti-parallel
Strand 4	C	282	288	anti-parallel
Strand 5	C	425	434	anti-parallel
Strand 6	C	291	294	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	529	first strand
Strand 2	C	535	537	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	133	135	anti-parallel
Strand 3	D	140	141	anti-parallel
Strand 4	D	105	109	parallel
Strand 5	D	96	100	anti-parallel
Strand 6	D	70	77	anti-parallel
Strand 7	D	125	129	anti-parallel
Strand 8	D	147	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C9W