Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CAD entry

There are 2 chains in PDB entry 9CAD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2311	ALA 2530
D	ASP 13	LEU 3830

There are218 helices in PDB entry 9CAD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2369	2383	Right-handed alpha
Helix 2	AA2	A	2400	2410	Right-handed alpha
Helix 3	AA3	A	2417	2434	Right-handed alpha
Helix 4	AA4	A	2444	2453	Right-handed alpha
Helix 5	AA5	A	2454	2474	Right-handed alpha
Helix 6	AA6	A	2493	2502	Right-handed alpha
Helix 7	AA7	A	2510	2530	Right-handed alpha
Helix 8	AA8	D	14	29	Right-handed alpha
Helix 9	AA9	D	34	48	Right-handed alpha
Helix 10	AB1	D	48	53	Right-handed alpha
Helix 11	AB2	D	54	56	Right-handed 310
Helix 12	AB3	D	57	76	Right-handed alpha
Helix 13	AB4	D	84	100	Right-handed alpha
Helix 14	AB5	D	103	105	Right-handed 310
Helix 15	AB6	D	106	124	Right-handed alpha
Helix 16	AB7	D	125	143	Right-handed alpha
Helix 17	AB8	D	148	173	Right-handed alpha
Helix 18	AB9	D	186	190	Right-handed 310
Helix 19	AC1	D	221	239	Right-handed alpha
Helix 20	AC2	D	243	248	Right-handed alpha
Helix 21	AC3	D	249	260	Right-handed alpha
Helix 22	AC4	D	263	268	Right-handed alpha
Helix 23	AC5	D	273	295	Right-handed alpha
Helix 24	AC6	D	298	305	Right-handed alpha
Helix 25	AC7	D	305	320	Right-handed alpha
Helix 26	AC8	D	324	340	Right-handed alpha
Helix 27	AC9	D	341	348	Right-handed 310
Helix 28	AD1	D	350	355	Right-handed alpha
Helix 29	AD2	D	356	361	Right-handed alpha
Helix 30	AD3	D	364	371	Right-handed alpha
Helix 31	AD4	D	371	387	Right-handed alpha
Helix 32	AD5	D	391	408	Right-handed alpha
Helix 33	AD6	D	412	438	Right-handed alpha
Helix 34	AD7	D	440	462	Right-handed alpha
Helix 35	AD8	D	462	471	Right-handed alpha
Helix 36	AD9	D	539	565	Right-handed alpha
Helix 37	AE1	D	582	600	Right-handed alpha
Helix 38	AE2	D	601	603	Right-handed 310
Helix 39	AE3	D	625	641	Right-handed alpha
Helix 40	AE4	D	643	665	Right-handed alpha
Helix 41	AE5	D	668	678	Right-handed alpha
Helix 42	AE6	D	678	696	Right-handed alpha
Helix 43	AE7	D	697	702	Right-handed 310
Helix 44	AE8	D	703	724	Right-handed alpha
Helix 45	AE9	D	724	748	Right-handed alpha
Helix 46	AF1	D	753	768	Right-handed alpha
Helix 47	AF2	D	772	780	Right-handed alpha
Helix 48	AF3	D	782	796	Right-handed alpha
Helix 49	AF4	D	799	812	Right-handed alpha
Helix 50	AF5	D	816	821	Right-handed alpha
Helix 51	AF6	D	823	836	Right-handed alpha
Helix 52	AF7	D	838	856	Right-handed alpha
Helix 53	AF8	D	857	866	Right-handed alpha
Helix 54	AF9	D	868	880	Right-handed alpha
Helix 55	AG1	D	884	899	Right-handed alpha
Helix 56	AG2	D	900	903	Right-handed 310
Helix 57	AG3	D	939	952	Right-handed alpha
Helix 58	AG4	D	956	974	Right-handed alpha
Helix 59	AG5	D	980	989	Right-handed alpha
Helix 60	AG6	D	991	996	Right-handed alpha
Helix 61	AG7	D	1004	1008	Right-handed 310
Helix 62	AG8	D	1012	1031	Right-handed alpha
Helix 63	AG9	D	1034	1058	Right-handed alpha
Helix 64	AH1	D	1073	1077	Right-handed 310
Helix 65	AH2	D	1090	1102	Right-handed alpha
Helix 66	AH3	D	1106	1127	Right-handed alpha
Helix 67	AH4	D	1128	1134	Right-handed alpha
Helix 68	AH5	D	1135	1151	Right-handed alpha
Helix 69	AH6	D	1153	1171	Right-handed alpha
Helix 70	AH7	D	1172	1179	Right-handed alpha
Helix 71	AH8	D	1179	1194	Right-handed alpha
Helix 72	AH9	D	1201	1219	Right-handed alpha
Helix 73	AI1	D	1227	1249	Right-handed alpha
Helix 74	AI2	D	1253	1272	Right-handed alpha
Helix 75	AI3	D	1274	1280	Right-handed alpha
Helix 76	AI4	D	1282	1287	Right-handed 310
Helix 77	AI5	D	1301	1318	Right-handed alpha
Helix 78	AI6	D	1329	1345	Right-handed alpha
Helix 79	AI7	D	1346	1352	Right-handed alpha
Helix 80	AI8	D	1362	1375	Right-handed alpha
Helix 81	AI9	D	1382	1395	Right-handed alpha
Helix 82	AJ1	D	1398	1414	Right-handed alpha
Helix 83	AJ2	D	1419	1434	Right-handed alpha
Helix 84	AJ3	D	1435	1440	Right-handed 310
Helix 85	AJ4	D	1441	1455	Right-handed alpha
Helix 86	AJ5	D	1456	1459	Right-handed 310
Helix 87	AJ6	D	1460	1485	Right-handed alpha
Helix 88	AJ7	D	1492	1504	Right-handed alpha
Helix 89	AJ8	D	1510	1512	Right-handed 310
Helix 90	AJ9	D	1513	1529	Right-handed alpha
Helix 91	AK1	D	1536	1547	Right-handed alpha
Helix 92	AK2	D	1547	1556	Right-handed alpha
Helix 93	AK3	D	1557	1563	Right-handed alpha
Helix 94	AK4	D	1563	1575	Right-handed alpha
Helix 95	AK5	D	1579	1588	Right-handed alpha
Helix 96	AK6	D	1590	1597	Right-handed alpha
Helix 97	AK7	D	1613	1635	Right-handed alpha
Helix 98	AK8	D	1642	1655	Right-handed alpha
Helix 99	AK9	D	1655	1664	Right-handed alpha
Helix 100	AL1	D	1669	1672	Right-handed 310
Helix 101	AL2	D	1673	1689	Right-handed alpha
Helix 102	AL3	D	1692	1699	Right-handed alpha
Helix 103	AL4	D	1700	1705	Right-handed alpha
Helix 104	AL5	D	1711	1726	Right-handed alpha
Helix 105	AL6	D	1727	1740	Right-handed alpha
Helix 106	AL7	D	1747	1758	Right-handed alpha
Helix 107	AL8	D	1758	1770	Right-handed alpha
Helix 108	AL9	D	1771	1777	Right-handed alpha
Helix 109	AM1	D	1788	1797	Right-handed alpha
Helix 110	AM2	D	1807	1825	Right-handed alpha
Helix 111	AM3	D	1825	1830	Right-handed alpha
Helix 112	AM4	D	1837	1848	Right-handed alpha
Helix 113	AM5	D	1849	1852	Right-handed 310
Helix 114	AM6	D	1858	1876	Right-handed alpha
Helix 115	AM7	D	1879	1892	Right-handed alpha
Helix 116	AM8	D	1898	1917	Right-handed alpha
Helix 117	AM9	D	1919	1935	Right-handed alpha
Helix 118	AN1	D	1938	1952	Right-handed alpha
Helix 119	AN2	D	1952	1957	Right-handed alpha
Helix 120	AN3	D	1959	1977	Right-handed alpha
Helix 121	AN4	D	1981	2007	Right-handed alpha
Helix 122	AN5	D	2072	2091	Right-handed alpha
Helix 123	AN6	D	2101	2116	Right-handed alpha
Helix 124	AN7	D	2129	2137	Right-handed alpha
Helix 125	AN8	D	2138	2140	Right-handed 310
Helix 126	AN9	D	2145	2163	Right-handed alpha
Helix 127	AO1	D	2164	2173	Right-handed alpha
Helix 128	AO2	D	2174	2183	Right-handed alpha
Helix 129	AO3	D	2187	2205	Right-handed alpha
Helix 130	AO4	D	2218	2242	Right-handed alpha
Helix 131	AO5	D	2246	2248	Right-handed 310
Helix 132	AO6	D	2249	2261	Right-handed alpha
Helix 133	AO7	D	2264	2270	Right-handed 310
Helix 134	AO8	D	2271	2288	Right-handed alpha
Helix 135	AO9	D	2301	2314	Right-handed alpha
Helix 136	AP1	D	2321	2331	Right-handed alpha
Helix 137	AP2	D	2331	2340	Right-handed alpha
Helix 138	AP3	D	2342	2359	Right-handed alpha
Helix 139	AP4	D	2370	2389	Right-handed alpha
Helix 140	AP5	D	2392	2409	Right-handed alpha
Helix 141	AP6	D	2415	2421	Right-handed alpha
Helix 142	AP7	D	2421	2430	Right-handed alpha
Helix 143	AP8	D	2433	2447	Right-handed alpha
Helix 144	AP9	D	2451	2462	Right-handed alpha
Helix 145	AQ1	D	2464	2469	Right-handed 310
Helix 146	AQ2	D	2473	2483	Right-handed alpha
Helix 147	AQ3	D	2504	2510	Right-handed alpha
Helix 148	AQ4	D	2511	2519	Right-handed alpha
Helix 149	AQ5	D	2568	2586	Right-handed alpha
Helix 150	AQ6	D	2588	2603	Right-handed alpha
Helix 151	AQ7	D	2603	2621	Right-handed alpha
Helix 152	AQ8	D	2623	2640	Right-handed alpha
Helix 153	AQ9	D	2641	2649	Right-handed 310
Helix 154	AR1	D	2652	2663	Right-handed alpha
Helix 155	AR2	D	2671	2682	Right-handed alpha
Helix 156	AR3	D	2684	2699	Right-handed alpha
Helix 157	AR4	D	2720	2737	Right-handed alpha
Helix 158	AR5	D	2739	2751	Right-handed alpha
Helix 159	AR6	D	2753	2765	Right-handed alpha
Helix 160	AR7	D	2767	2787	Right-handed alpha
Helix 161	AR8	D	2795	2813	Right-handed alpha
Helix 162	AR9	D	2815	2824	Right-handed alpha
Helix 163	AS1	D	2830	2838	Right-handed alpha
Helix 164	AS2	D	2839	2842	Right-handed 310
Helix 165	AS3	D	2843	2857	Right-handed alpha
Helix 166	AS4	D	2859	2861	Right-handed 310
Helix 167	AS5	D	2862	2877	Right-handed alpha
Helix 168	AS6	D	2882	2884	Right-handed 310
Helix 169	AS7	D	2885	2903	Right-handed alpha
Helix 170	AS8	D	2909	2911	Right-handed 310
Helix 171	AS9	D	2912	2935	Right-handed alpha
Helix 172	AT1	D	2942	2959	Right-handed alpha
Helix 173	AT2	D	2966	2991	Right-handed alpha
Helix 174	AT3	D	2998	3022	Right-handed alpha
Helix 175	AT4	D	3024	3033	Right-handed alpha
Helix 176	AT5	D	3034	3038	Right-handed 310
Helix 177	AT6	D	3042	3062	Right-handed alpha
Helix 178	AT7	D	3065	3079	Right-handed alpha
Helix 179	AT8	D	3080	3084	Right-handed 310
Helix 180	AT9	D	3085	3104	Right-handed alpha
Helix 181	AU1	D	3105	3120	Right-handed alpha
Helix 182	AU2	D	3123	3142	Right-handed alpha
Helix 183	AU3	D	3143	3158	Right-handed alpha
Helix 184	AU4	D	3162	3177	Right-handed alpha
Helix 185	AU5	D	3178	3180	Right-handed 310
Helix 186	AU6	D	3184	3194	Right-handed alpha
Helix 187	AU7	D	3198	3203	Right-handed 310
Helix 188	AU8	D	3205	3215	Right-handed alpha
Helix 189	AU9	D	3216	3220	Right-handed 310
Helix 190	AV1	D	3221	3232	Right-handed alpha
Helix 191	AV2	D	3232	3255	Right-handed alpha
Helix 192	AV3	D	3265	3282	Right-handed alpha
Helix 193	AV4	D	3282	3296	Right-handed alpha
Helix 194	AV5	D	3297	3300	Right-handed 310
Helix 195	AV6	D	3302	3325	Right-handed alpha
Helix 196	AV7	D	3326	3329	Right-handed 310
Helix 197	AV8	D	3335	3348	Right-handed alpha
Helix 198	AV9	D	3366	3380	Right-handed alpha
Helix 199	AW1	D	3381	3395	Right-handed alpha
Helix 200	AW2	D	3404	3424	Right-handed alpha
Helix 201	AW3	D	3433	3435	Right-handed 310
Helix 202	AW4	D	3436	3442	Right-handed alpha
Helix 203	AW5	D	3506	3528	Right-handed alpha
Helix 204	AW6	D	3564	3576	Right-handed alpha
Helix 205	AW7	D	3580	3596	Right-handed alpha
Helix 206	AW8	D	3601	3616	Right-handed alpha
Helix 207	AW9	D	3620	3630	Right-handed alpha
Helix 208	AX1	D	3632	3657	Right-handed alpha
Helix 209	AX2	D	3703	3717	Right-handed alpha
Helix 210	AX3	D	3717	3731	Right-handed alpha
Helix 211	AX4	D	3732	3735	Right-handed 310
Helix 212	AX5	D	3736	3757	Right-handed alpha
Helix 213	AX6	D	3774	3798	Right-handed alpha
Helix 214	AX7	D	3799	3803	Right-handed 310
Helix 215	AX8	D	3804	3815	Right-handed alpha
Helix 216	AX9	D	3815	3820	Right-handed alpha
Helix 217	AY1	D	3821	3822	Right-handed 310
Helix 218	AY2	D	3823	3827	Right-handed 310

There are 6 sheets in PDB entry 9CAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	199	first strand
Strand 2	D	209	214	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	607	first strand
Strand 2	D	613	615	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	923	928	first strand
Strand 2	D	933	938	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3429	3431	first strand
Strand 2	D	3473	3479	anti-parallel
Strand 3	D	3482	3491	anti-parallel
Strand 4	D	3467	3470	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3429	3431	first strand
Strand 2	D	3473	3479	anti-parallel
Strand 3	D	3482	3491	anti-parallel
Strand 4	D	3496	3503	anti-parallel
Strand 5	D	3552	3556	anti-parallel
Strand 6	D	3545	3547	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3561	3563	first strand
Strand 2	D	3667	3670	anti-parallel
Strand 3	D	3676	3678	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CAD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAD