Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CAF entry

There are 2 chains in PDB entry 9CAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2311	ASP 2531
D	ASP 13	LEU 3830

There are214 helices in PDB entry 9CAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2370	2384	Right-handed alpha
Helix 2	AA2	A	2401	2411	Right-handed alpha
Helix 3	AA3	A	2418	2435	Right-handed alpha
Helix 4	AA4	A	2445	2454	Right-handed alpha
Helix 5	AA5	A	2455	2475	Right-handed alpha
Helix 6	AA6	A	2494	2503	Right-handed alpha
Helix 7	AA7	A	2511	2531	Right-handed alpha
Helix 8	AA8	D	14	29	Right-handed alpha
Helix 9	AA9	D	34	48	Right-handed alpha
Helix 10	AB1	D	48	53	Right-handed alpha
Helix 11	AB2	D	54	56	Right-handed 310
Helix 12	AB3	D	57	76	Right-handed alpha
Helix 13	AB4	D	84	100	Right-handed alpha
Helix 14	AB5	D	103	105	Right-handed 310
Helix 15	AB6	D	106	124	Right-handed alpha
Helix 16	AB7	D	125	143	Right-handed alpha
Helix 17	AB8	D	148	173	Right-handed alpha
Helix 18	AB9	D	186	190	Right-handed 310
Helix 19	AC1	D	221	239	Right-handed alpha
Helix 20	AC2	D	243	249	Right-handed alpha
Helix 21	AC3	D	249	260	Right-handed alpha
Helix 22	AC4	D	263	268	Right-handed alpha
Helix 23	AC5	D	273	295	Right-handed alpha
Helix 24	AC6	D	298	320	Right-handed alpha
Helix 25	AC7	D	324	340	Right-handed alpha
Helix 26	AC8	D	341	348	Right-handed 310
Helix 27	AC9	D	350	355	Right-handed alpha
Helix 28	AD1	D	356	361	Right-handed alpha
Helix 29	AD2	D	364	387	Right-handed alpha
Helix 30	AD3	D	391	408	Right-handed alpha
Helix 31	AD4	D	412	438	Right-handed alpha
Helix 32	AD5	D	440	462	Right-handed alpha
Helix 33	AD6	D	462	471	Right-handed alpha
Helix 34	AD7	D	539	565	Right-handed alpha
Helix 35	AD8	D	582	600	Right-handed alpha
Helix 36	AD9	D	601	603	Right-handed 310
Helix 37	AE1	D	625	641	Right-handed alpha
Helix 38	AE2	D	643	665	Right-handed alpha
Helix 39	AE3	D	668	678	Right-handed alpha
Helix 40	AE4	D	678	696	Right-handed alpha
Helix 41	AE5	D	697	702	Right-handed 310
Helix 42	AE6	D	703	724	Right-handed alpha
Helix 43	AE7	D	724	748	Right-handed alpha
Helix 44	AE8	D	753	768	Right-handed alpha
Helix 45	AE9	D	772	780	Right-handed alpha
Helix 46	AF1	D	782	796	Right-handed alpha
Helix 47	AF2	D	799	812	Right-handed alpha
Helix 48	AF3	D	816	821	Right-handed alpha
Helix 49	AF4	D	823	836	Right-handed alpha
Helix 50	AF5	D	838	856	Right-handed alpha
Helix 51	AF6	D	857	866	Right-handed alpha
Helix 52	AF7	D	868	880	Right-handed alpha
Helix 53	AF8	D	884	899	Right-handed alpha
Helix 54	AF9	D	900	903	Right-handed 310
Helix 55	AG1	D	939	952	Right-handed alpha
Helix 56	AG2	D	956	974	Right-handed alpha
Helix 57	AG3	D	980	989	Right-handed alpha
Helix 58	AG4	D	991	996	Right-handed alpha
Helix 59	AG5	D	1004	1008	Right-handed 310
Helix 60	AG6	D	1012	1031	Right-handed alpha
Helix 61	AG7	D	1034	1058	Right-handed alpha
Helix 62	AG8	D	1073	1077	Right-handed 310
Helix 63	AG9	D	1090	1102	Right-handed alpha
Helix 64	AH1	D	1106	1127	Right-handed alpha
Helix 65	AH2	D	1128	1134	Right-handed alpha
Helix 66	AH3	D	1135	1151	Right-handed alpha
Helix 67	AH4	D	1153	1171	Right-handed alpha
Helix 68	AH5	D	1172	1179	Right-handed alpha
Helix 69	AH6	D	1179	1194	Right-handed alpha
Helix 70	AH7	D	1201	1219	Right-handed alpha
Helix 71	AH8	D	1227	1249	Right-handed alpha
Helix 72	AH9	D	1253	1272	Right-handed alpha
Helix 73	AI1	D	1274	1280	Right-handed alpha
Helix 74	AI2	D	1282	1287	Right-handed 310
Helix 75	AI3	D	1301	1318	Right-handed alpha
Helix 76	AI4	D	1329	1345	Right-handed alpha
Helix 77	AI5	D	1346	1352	Right-handed alpha
Helix 78	AI6	D	1362	1375	Right-handed alpha
Helix 79	AI7	D	1382	1395	Right-handed alpha
Helix 80	AI8	D	1398	1414	Right-handed alpha
Helix 81	AI9	D	1419	1434	Right-handed alpha
Helix 82	AJ1	D	1435	1440	Right-handed 310
Helix 83	AJ2	D	1441	1455	Right-handed alpha
Helix 84	AJ3	D	1456	1459	Right-handed 310
Helix 85	AJ4	D	1460	1485	Right-handed alpha
Helix 86	AJ5	D	1492	1504	Right-handed alpha
Helix 87	AJ6	D	1510	1512	Right-handed 310
Helix 88	AJ7	D	1513	1529	Right-handed alpha
Helix 89	AJ8	D	1536	1545	Right-handed alpha
Helix 90	AJ9	D	1547	1556	Right-handed alpha
Helix 91	AK1	D	1557	1563	Right-handed alpha
Helix 92	AK2	D	1563	1575	Right-handed alpha
Helix 93	AK3	D	1579	1588	Right-handed alpha
Helix 94	AK4	D	1590	1597	Right-handed alpha
Helix 95	AK5	D	1613	1635	Right-handed alpha
Helix 96	AK6	D	1642	1655	Right-handed alpha
Helix 97	AK7	D	1655	1664	Right-handed alpha
Helix 98	AK8	D	1673	1689	Right-handed alpha
Helix 99	AK9	D	1692	1699	Right-handed alpha
Helix 100	AL1	D	1700	1705	Right-handed alpha
Helix 101	AL2	D	1711	1726	Right-handed alpha
Helix 102	AL3	D	1727	1740	Right-handed alpha
Helix 103	AL4	D	1747	1758	Right-handed alpha
Helix 104	AL5	D	1758	1770	Right-handed alpha
Helix 105	AL6	D	1771	1777	Right-handed alpha
Helix 106	AL7	D	1788	1797	Right-handed alpha
Helix 107	AL8	D	1807	1825	Right-handed alpha
Helix 108	AL9	D	1825	1830	Right-handed alpha
Helix 109	AM1	D	1837	1848	Right-handed alpha
Helix 110	AM2	D	1849	1851	Right-handed 310
Helix 111	AM3	D	1858	1876	Right-handed alpha
Helix 112	AM4	D	1879	1892	Right-handed alpha
Helix 113	AM5	D	1898	1917	Right-handed alpha
Helix 114	AM6	D	1919	1935	Right-handed alpha
Helix 115	AM7	D	1938	1952	Right-handed alpha
Helix 116	AM8	D	1952	1957	Right-handed alpha
Helix 117	AM9	D	1959	1977	Right-handed alpha
Helix 118	AN1	D	1981	2007	Right-handed alpha
Helix 119	AN2	D	2072	2091	Right-handed alpha
Helix 120	AN3	D	2101	2116	Right-handed alpha
Helix 121	AN4	D	2130	2137	Right-handed alpha
Helix 122	AN5	D	2138	2140	Right-handed 310
Helix 123	AN6	D	2145	2163	Right-handed alpha
Helix 124	AN7	D	2164	2173	Right-handed alpha
Helix 125	AN8	D	2174	2183	Right-handed alpha
Helix 126	AN9	D	2187	2205	Right-handed alpha
Helix 127	AO1	D	2218	2242	Right-handed alpha
Helix 128	AO2	D	2246	2248	Right-handed 310
Helix 129	AO3	D	2249	2261	Right-handed alpha
Helix 130	AO4	D	2264	2270	Right-handed 310
Helix 131	AO5	D	2271	2288	Right-handed alpha
Helix 132	AO6	D	2301	2314	Right-handed alpha
Helix 133	AO7	D	2321	2331	Right-handed alpha
Helix 134	AO8	D	2331	2340	Right-handed alpha
Helix 135	AO9	D	2342	2359	Right-handed alpha
Helix 136	AP1	D	2370	2389	Right-handed alpha
Helix 137	AP2	D	2392	2409	Right-handed alpha
Helix 138	AP3	D	2415	2421	Right-handed alpha
Helix 139	AP4	D	2421	2430	Right-handed alpha
Helix 140	AP5	D	2433	2447	Right-handed alpha
Helix 141	AP6	D	2451	2462	Right-handed alpha
Helix 142	AP7	D	2464	2469	Right-handed 310
Helix 143	AP8	D	2473	2483	Right-handed alpha
Helix 144	AP9	D	2504	2510	Right-handed alpha
Helix 145	AQ1	D	2511	2519	Right-handed alpha
Helix 146	AQ2	D	2568	2586	Right-handed alpha
Helix 147	AQ3	D	2588	2603	Right-handed alpha
Helix 148	AQ4	D	2603	2621	Right-handed alpha
Helix 149	AQ5	D	2623	2640	Right-handed alpha
Helix 150	AQ6	D	2641	2649	Right-handed 310
Helix 151	AQ7	D	2652	2663	Right-handed alpha
Helix 152	AQ8	D	2671	2682	Right-handed alpha
Helix 153	AQ9	D	2684	2699	Right-handed alpha
Helix 154	AR1	D	2720	2737	Right-handed alpha
Helix 155	AR2	D	2739	2751	Right-handed alpha
Helix 156	AR3	D	2753	2765	Right-handed alpha
Helix 157	AR4	D	2767	2787	Right-handed alpha
Helix 158	AR5	D	2795	2813	Right-handed alpha
Helix 159	AR6	D	2815	2824	Right-handed alpha
Helix 160	AR7	D	2830	2838	Right-handed alpha
Helix 161	AR8	D	2839	2842	Right-handed 310
Helix 162	AR9	D	2843	2857	Right-handed alpha
Helix 163	AS1	D	2859	2861	Right-handed 310
Helix 164	AS2	D	2862	2877	Right-handed alpha
Helix 165	AS3	D	2882	2884	Right-handed 310
Helix 166	AS4	D	2885	2903	Right-handed alpha
Helix 167	AS5	D	2909	2911	Right-handed 310
Helix 168	AS6	D	2912	2935	Right-handed alpha
Helix 169	AS7	D	2942	2959	Right-handed alpha
Helix 170	AS8	D	2966	2991	Right-handed alpha
Helix 171	AS9	D	2998	3022	Right-handed alpha
Helix 172	AT1	D	3024	3033	Right-handed alpha
Helix 173	AT2	D	3034	3038	Right-handed 310
Helix 174	AT3	D	3042	3062	Right-handed alpha
Helix 175	AT4	D	3065	3079	Right-handed alpha
Helix 176	AT5	D	3080	3084	Right-handed 310
Helix 177	AT6	D	3085	3103	Right-handed alpha
Helix 178	AT7	D	3105	3120	Right-handed alpha
Helix 179	AT8	D	3123	3142	Right-handed alpha
Helix 180	AT9	D	3143	3158	Right-handed alpha
Helix 181	AU1	D	3162	3177	Right-handed alpha
Helix 182	AU2	D	3178	3180	Right-handed 310
Helix 183	AU3	D	3184	3194	Right-handed alpha
Helix 184	AU4	D	3198	3203	Right-handed 310
Helix 185	AU5	D	3205	3215	Right-handed alpha
Helix 186	AU6	D	3217	3232	Right-handed alpha
Helix 187	AU7	D	3232	3255	Right-handed alpha
Helix 188	AU8	D	3265	3282	Right-handed alpha
Helix 189	AU9	D	3282	3296	Right-handed alpha
Helix 190	AV1	D	3297	3300	Right-handed 310
Helix 191	AV2	D	3302	3325	Right-handed alpha
Helix 192	AV3	D	3326	3329	Right-handed 310
Helix 193	AV4	D	3335	3348	Right-handed alpha
Helix 194	AV5	D	3366	3379	Right-handed alpha
Helix 195	AV6	D	3381	3395	Right-handed alpha
Helix 196	AV7	D	3404	3424	Right-handed alpha
Helix 197	AV8	D	3433	3435	Right-handed 310
Helix 198	AV9	D	3436	3442	Right-handed alpha
Helix 199	AW1	D	3506	3528	Right-handed alpha
Helix 200	AW2	D	3564	3576	Right-handed alpha
Helix 201	AW3	D	3580	3596	Right-handed alpha
Helix 202	AW4	D	3601	3616	Right-handed alpha
Helix 203	AW5	D	3620	3630	Right-handed alpha
Helix 204	AW6	D	3632	3657	Right-handed alpha
Helix 205	AW7	D	3703	3717	Right-handed alpha
Helix 206	AW8	D	3717	3731	Right-handed alpha
Helix 207	AW9	D	3732	3735	Right-handed 310
Helix 208	AX1	D	3736	3757	Right-handed alpha
Helix 209	AX2	D	3774	3798	Right-handed alpha
Helix 210	AX3	D	3799	3803	Right-handed 310
Helix 211	AX4	D	3804	3815	Right-handed alpha
Helix 212	AX5	D	3815	3820	Right-handed alpha
Helix 213	AX6	D	3821	3822	Right-handed 310
Helix 214	AX7	D	3823	3827	Right-handed 310

There are 6 sheets in PDB entry 9CAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	199	first strand
Strand 2	D	209	214	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	607	first strand
Strand 2	D	613	615	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	923	928	first strand
Strand 2	D	933	938	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3429	3431	first strand
Strand 2	D	3473	3479	anti-parallel
Strand 3	D	3482	3491	anti-parallel
Strand 4	D	3467	3470	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3429	3431	first strand
Strand 2	D	3473	3479	anti-parallel
Strand 3	D	3482	3491	anti-parallel
Strand 4	D	3496	3503	anti-parallel
Strand 5	D	3552	3556	anti-parallel
Strand 6	D	3545	3547	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3561	3563	first strand
Strand 2	D	3667	3670	anti-parallel
Strand 3	D	3676	3678	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAF