Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CAK entry

There are 5 chains in PDB entry 9CAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 0SER 335
A
 PRO 337PHE 611
B
 MET 1TRP 161
D
 G -2 T 4
E
 A 5 T 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9CAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
77 82Right-handed 310
Helix 3
AA3
A
98 106Right-handed alpha
Helix 4
AA4
A
119 134Right-handed alpha
Helix 5
AA5
A
156 166Right-handed alpha
Helix 6
AA6
A
171 204Right-handed alpha
Helix 7
AA7
A
205 208Right-handed 310
Helix 8
AA8
A
217 234Right-handed alpha
Helix 9
AA9
A
249 252Right-handed 310
Helix 10
AB1
A
266 279Right-handed alpha
Helix 11
AB2
A
302 313Right-handed alpha
Helix 12
AB3
A
317 332Right-handed alpha
Helix 13
AB4
A
349 357Right-handed alpha
Helix 14
AB5
A
363 373Right-handed alpha
Helix 15
AB6
A
404 421Right-handed alpha
Helix 16
AB7
A
451 455Right-handed 310
Helix 17
AB8
A
495 506Right-handed alpha
Helix 18
AB9
A
513 524Right-handed alpha
Helix 19
AC1
A
538 552Right-handed alpha
Helix 20
AC2
A
553 556Right-handed 310
Helix 21
AC3
A
559 573Right-handed alpha
Helix 22
AC4
A
577 599Right-handed alpha
Helix 23
AC5
A
600 609Right-handed alpha
Helix 24
AC6
B
3 13Right-handed alpha
Helix 25
AC7
B
17 24Right-handed alpha
Helix 26
AC8
B
32 43Right-handed alpha
Helix 27
AC9
B
44 49Right-handed alpha
Helix 28
AD1
B
157 161Right-handed 310
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There are 5 sheets in PDB entry 9CAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
2 8parallel
Strand 5
A
109 115parallel
Strand 6
A
147 150parallel
Strand 7
A
167 168anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
87 91anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
424 435anti-parallel
Strand 3
A
438 443anti-parallel
Strand 4
A
255 259anti-parallel
Strand 5
A
239 247anti-parallel
Strand 6
A
475 487anti-parallel
Strand 7
A
282 295anti-parallel
Strand 8
A
424 435anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 530first strand
Strand 2
A
534 537anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
132 136anti-parallel
Strand 3
B
139 142anti-parallel
Strand 4
B
105 110parallel
Strand 5
B
95 100anti-parallel
Strand 6
B
69 78anti-parallel
Strand 7
B
126 129anti-parallel
Strand 8
B
148 149anti-parallel
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