Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CAR entry

There are 2 chains in PDB entry 9CAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 38	PRO 766
B	ASP 38	PHE 524

There are 35 helices in PDB entry 9CAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	50	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed 310
Helix 3	AA3	A	200	206	Right-handed alpha
Helix 4	AA4	A	274	276	Right-handed 310
Helix 5	AA5	A	290	295	Right-handed alpha
Helix 6	AA6	A	421	425	Right-handed 310
Helix 7	AA7	A	497	507	Right-handed alpha
Helix 8	AA8	A	562	570	Right-handed alpha
Helix 9	AA9	A	587	592	Right-handed alpha
Helix 10	AB1	A	593	595	Right-handed 310
Helix 11	AB2	A	600	615	Right-handed alpha
Helix 12	AB3	A	631	641	Right-handed alpha
Helix 13	AB4	A	663	672	Right-handed alpha
Helix 14	AB5	A	679	686	Right-handed alpha
Helix 15	AB6	A	687	698	Right-handed 310
Helix 16	AB7	A	712	727	Right-handed alpha
Helix 17	AB8	A	744	763	Right-handed alpha
Helix 18	AB9	B	44	50	Right-handed alpha
Helix 19	AC1	B	91	99	Right-handed 310
Helix 20	AC2	B	200	206	Right-handed alpha
Helix 21	AC3	B	274	276	Right-handed 310
Helix 22	AC4	B	290	295	Right-handed alpha
Helix 23	AC5	B	421	425	Right-handed 310
Helix 24	AC6	B	497	507	Right-handed alpha
Helix 25	AC7	B	562	570	Right-handed alpha
Helix 26	AC8	B	587	592	Right-handed alpha
Helix 27	AC9	B	593	595	Right-handed 310
Helix 28	AD1	B	600	615	Right-handed alpha
Helix 29	AD2	B	631	641	Right-handed alpha
Helix 30	AD3	B	658	662	Right-handed 310
Helix 31	AD4	B	663	672	Right-handed alpha
Helix 32	AD5	B	679	686	Right-handed alpha
Helix 33	AD6	B	687	698	Right-handed 310
Helix 34	AD7	B	712	727	Right-handed alpha
Helix 35	AD8	B	744	763	Right-handed alpha

There are 24 sheets in PDB entry 9CAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	86	90	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	128	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	164	167	anti-parallel
Strand 3	A	172	175	anti-parallel
Strand 4	A	183	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	215	216	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	265	272	anti-parallel
Strand 4	A	284	286	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	250	255	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	331	anti-parallel
Strand 4	A	336	339	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	331	anti-parallel
Strand 4	A	345	348	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	391	396	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	410	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	442	444	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	461	first strand
Strand 2	A	467	475	anti-parallel
Strand 3	A	479	484	anti-parallel
Strand 4	A	489	495	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	519	first strand
Strand 2	A	522	530	anti-parallel
Strand 3	A	574	578	anti-parallel
Strand 4	A	540	545	parallel
Strand 5	A	619	630	parallel
Strand 6	A	649	655	parallel
Strand 7	A	699	705	parallel
Strand 8	A	731	735	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	86	90	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	113	122	anti-parallel
Strand 3	B	128	136	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	164	167	anti-parallel
Strand 3	B	172	175	anti-parallel
Strand 4	B	183	184	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	215	216	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	265	272	anti-parallel
Strand 4	B	284	286	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	250	255	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	307	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	322	331	anti-parallel
Strand 4	B	336	339	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	307	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	322	331	anti-parallel
Strand 4	B	345	348	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	391	396	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	410	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	442	444	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	461	first strand
Strand 2	B	467	475	anti-parallel
Strand 3	B	479	484	anti-parallel
Strand 4	B	489	495	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	519	first strand
Strand 2	B	522	530	anti-parallel
Strand 3	B	574	578	anti-parallel
Strand 4	B	540	545	parallel
Strand 5	B	619	630	parallel
Strand 6	B	649	655	parallel
Strand 7	B	699	705	parallel
Strand 8	B	731	735	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CAR