Analysis of interatomic Contacts of Structural Units in PDB entry:
9CB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CB5 entry

There are 8 chains in PDB entry 9CB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 302	ASN 470
B	GLY 302	ASP 472
C	A -4	T 23
D	ILE 0	LYS 233
F	T 1	T 23
G	GLU -1	CYS 231
H	SER -2	CYS 212
I	SER -2	TYR 190

There are 24 helices in PDB entry 9CB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	319	334	Right-handed alpha
Helix 2	AA2	A	356	365	Right-handed alpha
Helix 3	AA3	A	442	447	Right-handed alpha
Helix 4	AA4	B	319	334	Right-handed alpha
Helix 5	AA5	B	356	365	Right-handed alpha
Helix 6	AA6	B	384	392	Right-handed alpha
Helix 7	AA7	B	405	413	Right-handed alpha
Helix 8	AA8	B	438	449	Right-handed alpha
Helix 9	AA9	D	29	33	Right-handed 310
Helix 10	AB1	D	88	92	Right-handed 310
Helix 11	AB2	D	106	112	Right-handed 310
Helix 12	AB3	D	142	146	Right-handed 310
Helix 13	AB4	D	171	173	Right-handed 310
Helix 14	AB5	D	202	206	Right-handed 310
Helix 15	AB6	D	216	219	Right-handed 310
Helix 16	AB7	G	29	33	Right-handed 310
Helix 17	AB8	G	88	92	Right-handed 310
Helix 18	AB9	G	106	112	Right-handed 310
Helix 19	AC1	G	215	219	Right-handed 310
Helix 20	AC2	H	77	81	Right-handed 310
Helix 21	AC3	H	119	124	Right-handed alpha
Helix 22	AC4	H	180	185	Right-handed alpha
Helix 23	AC5	I	77	81	Right-handed 310
Helix 24	AC6	I	181	186	Right-handed alpha

There are 29 sheets in PDB entry 9CB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	308	312	anti-parallel
Strand 3	A	377	379	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	374	375	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	462	463	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	343	first strand
Strand 2	B	349	353	anti-parallel
Strand 3	B	308	312	anti-parallel
Strand 4	B	377	379	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	374	375	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	424	first strand
Strand 2	B	427	435	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	460	463	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	457	458	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	122	126	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	46	53	anti-parallel
Strand 6	D	58	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	122	126	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	115	118	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	151	160	anti-parallel
Strand 3	D	191	199	anti-parallel
Strand 4	D	179	185	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	211	215	anti-parallel
Strand 3	D	220	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	46	53	anti-parallel
Strand 6	G	58	61	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	115	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	152	first strand
Strand 2	G	198	199	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	160	first strand
Strand 2	G	191	196	anti-parallel
Strand 3	G	179	180	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	160	first strand
Strand 2	G	191	196	anti-parallel
Strand 3	G	184	185	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	169	first strand
Strand 2	G	211	212	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	68	73	anti-parallel
Strand 4	H	60	65	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	11	first strand
Strand 2	H	100	104	parallel
Strand 3	H	83	88	anti-parallel
Strand 4	H	31	36	anti-parallel
Strand 5	H	43	47	anti-parallel
Strand 6	H	51	52	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	11	first strand
Strand 2	H	100	104	parallel
Strand 3	H	83	88	anti-parallel
Strand 4	H	95	96	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	116	first strand
Strand 2	H	128	137	anti-parallel
Strand 3	H	171	179	anti-parallel
Strand 4	H	157	161	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	152	first strand
Strand 2	H	142	148	anti-parallel
Strand 3	H	190	196	anti-parallel
Strand 4	H	203	207	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	5	first strand
Strand 2	I	17	23	anti-parallel
Strand 3	I	68	73	anti-parallel
Strand 4	I	60	64	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	11	first strand
Strand 2	I	100	104	parallel
Strand 3	I	83	88	anti-parallel
Strand 4	I	31	36	anti-parallel
Strand 5	I	43	47	anti-parallel
Strand 6	I	51	52	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	11	first strand
Strand 2	I	100	104	parallel
Strand 3	I	83	88	anti-parallel
Strand 4	I	95	96	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	116	first strand
Strand 2	I	127	137	anti-parallel
Strand 3	I	171	180	anti-parallel
Strand 4	I	157	161	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	152	first strand
Strand 2	I	144	148	anti-parallel
Strand 3	I	190	194	anti-parallel
Strand 4	I	204	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CB5