Analysis of interatomic Contacts of Structural Units in PDB entry:
9CB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CB6 entry

There are 4 chains in PDB entry 9CB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 259
B
 GLN 3SER 259
C
 MET 1SER 259
D
 THR 4SER 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 9CB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
12 25Right-handed alpha
Helix 3
AA3
A
26 44Right-handed alpha
Helix 4
AA4
A
53 67Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
108 117Right-handed alpha
Helix 7
AA7
A
119 135Right-handed alpha
Helix 8
AA8
A
148 162Right-handed alpha
Helix 9
AA9
A
172 183Right-handed alpha
Helix 10
AB1
A
200 211Right-handed alpha
Helix 11
AB2
A
222 227Right-handed 310
Helix 12
AB3
A
243 255Right-handed alpha
Helix 13
AB4
B
4 12Right-handed alpha
Helix 14
AB5
B
12 25Right-handed alpha
Helix 15
AB6
B
26 44Right-handed alpha
Helix 16
AB7
B
53 67Right-handed alpha
Helix 17
AB8
B
94 105Right-handed alpha
Helix 18
AB9
B
108 117Right-handed alpha
Helix 19
AC1
B
119 135Right-handed alpha
Helix 20
AC2
B
148 162Right-handed alpha
Helix 21
AC3
B
172 183Right-handed alpha
Helix 22
AC4
B
200 211Right-handed alpha
Helix 23
AC5
B
222 227Right-handed 310
Helix 24
AC6
B
243 257Right-handed alpha
Helix 25
AC7
C
3 8Right-handed alpha
Helix 26
AC8
C
12 25Right-handed alpha
Helix 27
AC9
C
26 44Right-handed alpha
Helix 28
AD1
C
53 67Right-handed alpha
Helix 29
AD2
C
94 104Right-handed alpha
Helix 30
AD3
C
108 117Right-handed alpha
Helix 31
AD4
C
119 136Right-handed alpha
Helix 32
AD5
C
148 162Right-handed alpha
Helix 33
AD6
C
172 183Right-handed alpha
Helix 34
AD7
C
200 211Right-handed alpha
Helix 35
AD8
C
222 227Right-handed 310
Helix 36
AD9
C
243 257Right-handed alpha
Helix 37
AE1
D
12 25Right-handed alpha
Helix 38
AE2
D
26 44Right-handed alpha
Helix 39
AE3
D
53 69Right-handed alpha
Helix 40
AE4
D
94 104Right-handed alpha
Helix 41
AE5
D
108 117Right-handed alpha
Helix 42
AE6
D
119 135Right-handed alpha
Helix 43
AE7
D
148 162Right-handed alpha
Helix 44
AE8
D
172 183Right-handed alpha
Helix 45
AE9
D
200 211Right-handed alpha
Helix 46
AF1
D
222 227Right-handed 310
Helix 47
AF2
D
243 257Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9CB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
141 145parallel
Strand 3
A
188 190parallel
Strand 4
A
216 220parallel
Strand 5
A
236 239parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
141 145parallel
Strand 3
B
187 190parallel
Strand 4
B
216 220parallel
Strand 5
B
236 239parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 170first strand
Strand 2
C
141 145parallel
Strand 3
C
187 190parallel
Strand 4
C
216 220parallel
Strand 5
C
236 239parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
165 170first strand
Strand 2
D
141 145parallel
Strand 3
D
187 190parallel
Strand 4
D
216 220parallel
Strand 5
D
236 239parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il