Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CBA entry

There is 1 chain in PDB entry 9CBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 4PRO 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9CBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
59 71Right-handed alpha
Helix 3
AA3
A
123 138Right-handed alpha
Helix 4
AA4
A
182 194Right-handed alpha
Helix 5
AA5
A
207 220Right-handed alpha
Helix 6
AA6
A
230 235Right-handed 310
Helix 7
AA7
A
242 251Right-handed alpha
Helix 8
AA8
A
260 264Right-handed 310
Helix 9
AA9
A
267 274Right-handed alpha
Helix 10
AB1
A
279 283Right-handed 310
Helix 11
AB2
A
300 310Right-handed alpha
Helix 12
AB3
A
334 361Right-handed alpha
Helix 13
AB4
A
374 382Right-handed alpha
Helix 14
AB5
A
383 391Right-handed alpha
Helix 15
AB6
A
414 418Right-handed 310
Helix 16
AB7
A
419 426Right-handed alpha
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There are 5 sheets in PDB entry 9CBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
78 80anti-parallel
Strand 3
A
28 31parallel
Strand 4
A
199 202parallel
Strand 5
A
223 228parallel
Strand 6
A
254 258parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
174 179anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
164 168anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
321 324anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
432 434anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il