Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CBD entry

There are 2 chains in PDB entry 9CBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1057GLU 1339
B
 ALA 1057GLU 1339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9CBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1058 1070Right-handed alpha
Helix 2
AA2
A
1072 1085Right-handed alpha
Helix 3
AA3
A
1134 1140Right-handed alpha
Helix 4
AA4
A
1169 1186Right-handed alpha
Helix 5
AA5
A
1196 1212Right-handed alpha
Helix 6
AA6
A
1231 1237Right-handed alpha
Helix 7
AA7
A
1237 1248Right-handed alpha
Helix 8
AA8
A
1254 1270Right-handed alpha
Helix 9
AA9
A
1293 1297Right-handed 310
Helix 10
AB1
A
1323 1339Right-handed alpha
Helix 11
AB2
B
1058 1070Right-handed alpha
Helix 12
AB3
B
1072 1085Right-handed alpha
Helix 13
AB4
B
1092 1096Right-handed 310
Helix 14
AB5
B
1134 1140Right-handed alpha
Helix 15
AB6
B
1169 1186Right-handed alpha
Helix 16
AB7
B
1196 1214Right-handed alpha
Helix 17
AB8
B
1231 1237Right-handed alpha
Helix 18
AB9
B
1237 1248Right-handed alpha
Helix 19
AC1
B
1254 1270Right-handed alpha
Helix 20
AC2
B
1293 1297Right-handed 310
Helix 21
AC3
B
1317 1321Right-handed 310
Helix 22
AC4
B
1323 1339Right-handed alpha
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There are 4 sheets in PDB entry 9CBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1089 1090first strand
Strand 2
A
1166 1167parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1106first strand
Strand 2
A
1147 1150anti-parallel
Strand 3
A
1118 1122parallel
Strand 4
A
1190 1195parallel
Strand 5
A
1219 1223parallel
Strand 6
A
1280 1285parallel
Strand 7
A
1308 1312parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1089 1090first strand
Strand 2
B
1166 1167parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1103 1106first strand
Strand 2
B
1147 1150anti-parallel
Strand 3
B
1118 1122parallel
Strand 4
B
1190 1195parallel
Strand 5
B
1219 1223parallel
Strand 6
B
1280 1285parallel
Strand 7
B
1308 1312parallel
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