Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CBM entry

There are 4 chains in PDB entry 9CBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	PHE 354
B	GLU 3	ASN 340
G	SER 8	PHE 67
R	VAL 47	CYS 457

There are 31 helices in PDB entry 9CBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	32	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	211	216	Right-handed 310
Helix 4	AA4	A	228	232	Right-handed 310
Helix 5	AA5	A	241	255	Right-handed alpha
Helix 6	AA6	A	270	278	Right-handed alpha
Helix 7	AA7	A	282	287	Right-handed 310
Helix 8	AA8	A	295	309	Right-handed alpha
Helix 9	AA9	A	331	351	Right-handed alpha
Helix 10	AB1	B	4	23	Right-handed alpha
Helix 11	AB2	B	24	26	Right-handed 310
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	B	35	37	Right-handed 310
Helix 14	AB5	G	9	24	Right-handed alpha
Helix 15	AB6	G	29	44	Right-handed alpha
Helix 16	AB7	G	55	59	Right-handed 310
Helix 17	AB8	R	48	75	Right-handed alpha
Helix 18	AB9	R	83	100	Right-handed alpha
Helix 19	AC1	R	101	111	Right-handed alpha
Helix 20	AC2	R	132	139	Right-handed alpha
Helix 21	AC3	R	140	152	Right-handed alpha
Helix 22	AC4	R	152	158	Right-handed alpha
Helix 23	AC5	R	161	181	Right-handed alpha
Helix 24	AC6	R	211	220	Right-handed alpha
Helix 25	AC7	R	232	241	Right-handed alpha
Helix 26	AC8	R	385	402	Right-handed alpha
Helix 27	AC9	R	402	412	Right-handed alpha
Helix 28	AD1	R	413	415	Right-handed 310
Helix 29	AD2	R	419	427	Right-handed alpha
Helix 30	AD3	R	428	441	Right-handed alpha
Helix 31	AD4	R	445	457	Right-handed alpha

There are 8 sheets in PDB entry 9CBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	196	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	264	269	parallel
Strand 6	A	319	322	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	286	287	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	336	338	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBM