Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CBO entry

There are 3 chains in PDB entry 9CBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 364	HIS 873
B	GLN 364	HIS 873
C	GLN 364	ASP 625

There are161 helices in PDB entry 9CBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	380	389	Right-handed alpha
Helix 2	AA2	A	391	405	Right-handed alpha
Helix 3	AA3	A	420	436	Right-handed alpha
Helix 4	AA4	A	446	457	Right-handed alpha
Helix 5	AA5	A	470	485	Right-handed alpha
Helix 6	AA6	A	502	520	Right-handed alpha
Helix 7	AA7	A	524	526	Right-handed 310
Helix 8	AA8	A	541	545	Right-handed 310
Helix 9	AA9	A	546	562	Right-handed alpha
Helix 10	AB1	A	570	576	Right-handed 310
Helix 11	AB2	A	579	597	Right-handed alpha
Helix 12	AB3	A	605	609	Right-handed 310
Helix 13	AB4	A	611	615	Right-handed 310
Helix 14	AB5	A	616	629	Right-handed alpha
Helix 15	AB6	A	636	646	Right-handed alpha
Helix 16	AB7	A	651	661	Right-handed alpha
Helix 17	AB8	A	663	675	Right-handed alpha
Helix 18	AB9	A	679	690	Right-handed alpha
Helix 19	AC1	A	693	700	Right-handed alpha
Helix 20	AC2	A	700	715	Right-handed alpha
Helix 21	AC3	A	719	738	Right-handed alpha
Helix 22	AC4	A	739	741	Right-handed 310
Helix 23	AC5	A	762	775	Right-handed alpha
Helix 24	AC6	A	787	799	Right-handed alpha
Helix 25	AC7	A	809	826	Right-handed alpha
Helix 26	AC8	A	840	848	Right-handed alpha
Helix 27	AC9	A	859	872	Right-handed alpha
Helix 28	AD1	B	380	389	Right-handed alpha
Helix 29	AD2	B	391	405	Right-handed alpha
Helix 30	AD3	B	420	436	Right-handed alpha
Helix 31	AD4	B	446	457	Right-handed alpha
Helix 32	AD5	B	470	485	Right-handed alpha
Helix 33	AD6	B	502	520	Right-handed alpha
Helix 34	AD7	B	524	526	Right-handed 310
Helix 35	AD8	B	541	545	Right-handed 310
Helix 36	AD9	B	546	562	Right-handed alpha
Helix 37	AE1	B	570	576	Right-handed 310
Helix 38	AE2	B	579	597	Right-handed alpha
Helix 39	AE3	B	605	609	Right-handed 310
Helix 40	AE4	B	611	615	Right-handed 310
Helix 41	AE5	B	616	628	Right-handed alpha
Helix 42	AE6	B	636	646	Right-handed alpha
Helix 43	AE7	B	651	661	Right-handed alpha
Helix 44	AE8	B	663	675	Right-handed alpha
Helix 45	AE9	B	679	690	Right-handed alpha
Helix 46	AF1	B	693	700	Right-handed alpha
Helix 47	AF2	B	700	715	Right-handed alpha
Helix 48	AF3	B	719	738	Right-handed alpha
Helix 49	AF4	B	739	741	Right-handed 310
Helix 50	AF5	B	762	775	Right-handed alpha
Helix 51	AF6	B	787	799	Right-handed alpha
Helix 52	AF7	B	809	826	Right-handed alpha
Helix 53	AF8	B	840	848	Right-handed alpha
Helix 54	AF9	B	859	872	Right-handed alpha
Helix 55	AG1	C	380	389	Right-handed alpha
Helix 56	AG2	C	391	405	Right-handed alpha
Helix 57	AG3	C	420	436	Right-handed alpha
Helix 58	AG4	C	446	457	Right-handed alpha
Helix 59	AG5	C	470	485	Right-handed alpha
Helix 60	AG6	C	502	520	Right-handed alpha
Helix 61	AG7	C	524	526	Right-handed 310
Helix 62	AG8	C	541	545	Right-handed 310
Helix 63	AG9	C	546	562	Right-handed alpha
Helix 64	AH1	C	570	576	Right-handed 310
Helix 65	AH2	C	579	597	Right-handed alpha
Helix 66	AH3	C	605	609	Right-handed 310
Helix 67	AH4	C	611	615	Right-handed 310
Helix 68	AH5	C	616	629	Right-handed alpha
Helix 69	AH6	C	636	645	Right-handed alpha
Helix 70	AH7	C	651	661	Right-handed alpha
Helix 71	AH8	C	663	675	Right-handed alpha
Helix 72	AH9	C	679	690	Right-handed alpha
Helix 73	AI1	C	693	700	Right-handed alpha
Helix 74	AI2	C	700	715	Right-handed alpha
Helix 75	AI3	C	719	738	Right-handed alpha
Helix 76	AI4	C	739	741	Right-handed 310
Helix 77	AI5	C	762	775	Right-handed alpha
Helix 78	AI6	C	787	799	Right-handed alpha
Helix 79	AI7	C	809	826	Right-handed alpha
Helix 80	AI8	C	840	848	Right-handed alpha
Helix 81	AI9	C	859	872	Right-handed alpha
Helix 82	AJ1	D	380	389	Right-handed alpha
Helix 83	AJ2	D	391	405	Right-handed alpha
Helix 84	AJ3	D	420	436	Right-handed alpha
Helix 85	AJ4	D	446	457	Right-handed alpha
Helix 86	AJ5	D	471	485	Right-handed alpha
Helix 87	AJ6	D	502	520	Right-handed alpha
Helix 88	AJ7	D	524	526	Right-handed 310
Helix 89	AJ8	D	541	545	Right-handed 310
Helix 90	AJ9	D	546	562	Right-handed alpha
Helix 91	AK1	D	570	576	Right-handed 310
Helix 92	AK2	D	579	597	Right-handed alpha
Helix 93	AK3	D	605	609	Right-handed 310
Helix 94	AK4	D	611	615	Right-handed 310
Helix 95	AK5	D	616	628	Right-handed alpha
Helix 96	AK6	D	636	648	Right-handed alpha
Helix 97	AK7	D	651	661	Right-handed alpha
Helix 98	AK8	D	663	675	Right-handed alpha
Helix 99	AK9	D	679	690	Right-handed alpha
Helix 100	AL1	D	693	700	Right-handed alpha
Helix 101	AL2	D	700	715	Right-handed alpha
Helix 102	AL3	D	719	738	Right-handed alpha
Helix 103	AL4	D	739	741	Right-handed 310
Helix 104	AL5	D	762	775	Right-handed alpha
Helix 105	AL6	D	787	799	Right-handed alpha
Helix 106	AL7	D	809	826	Right-handed alpha
Helix 107	AL8	D	840	848	Right-handed alpha
Helix 108	AL9	D	859	872	Right-handed alpha
Helix 109	AM1	E	380	389	Right-handed alpha
Helix 110	AM2	E	391	405	Right-handed alpha
Helix 111	AM3	E	420	436	Right-handed alpha
Helix 112	AM4	E	446	457	Right-handed alpha
Helix 113	AM5	E	470	485	Right-handed alpha
Helix 114	AM6	E	502	520	Right-handed alpha
Helix 115	AM7	E	524	526	Right-handed 310
Helix 116	AM8	E	541	545	Right-handed 310
Helix 117	AM9	E	546	562	Right-handed alpha
Helix 118	AN1	E	570	576	Right-handed 310
Helix 119	AN2	E	579	597	Right-handed alpha
Helix 120	AN3	E	611	615	Right-handed 310
Helix 121	AN4	E	616	628	Right-handed alpha
Helix 122	AN5	E	636	646	Right-handed alpha
Helix 123	AN6	E	651	661	Right-handed alpha
Helix 124	AN7	E	663	675	Right-handed alpha
Helix 125	AN8	E	679	690	Right-handed alpha
Helix 126	AN9	E	693	700	Right-handed alpha
Helix 127	AO1	E	700	715	Right-handed alpha
Helix 128	AO2	E	719	738	Right-handed alpha
Helix 129	AO3	E	739	741	Right-handed 310
Helix 130	AO4	E	762	775	Right-handed alpha
Helix 131	AO5	E	787	799	Right-handed alpha
Helix 132	AO6	E	809	826	Right-handed alpha
Helix 133	AO7	E	840	848	Right-handed alpha
Helix 134	AO8	E	859	872	Right-handed alpha
Helix 135	AO9	F	380	389	Right-handed alpha
Helix 136	AP1	F	391	405	Right-handed alpha
Helix 137	AP2	F	420	436	Right-handed alpha
Helix 138	AP3	F	446	457	Right-handed alpha
Helix 139	AP4	F	470	485	Right-handed alpha
Helix 140	AP5	F	502	520	Right-handed alpha
Helix 141	AP6	F	524	526	Right-handed 310
Helix 142	AP7	F	541	545	Right-handed 310
Helix 143	AP8	F	546	562	Right-handed alpha
Helix 144	AP9	F	570	576	Right-handed 310
Helix 145	AQ1	F	579	597	Right-handed alpha
Helix 146	AQ2	F	605	609	Right-handed 310
Helix 147	AQ3	F	611	615	Right-handed 310
Helix 148	AQ4	F	616	628	Right-handed alpha
Helix 149	AQ5	F	636	648	Right-handed alpha
Helix 150	AQ6	F	651	661	Right-handed alpha
Helix 151	AQ7	F	663	675	Right-handed alpha
Helix 152	AQ8	F	679	690	Right-handed alpha
Helix 153	AQ9	F	693	700	Right-handed alpha
Helix 154	AR1	F	700	715	Right-handed alpha
Helix 155	AR2	F	719	738	Right-handed alpha
Helix 156	AR3	F	739	741	Right-handed 310
Helix 157	AR4	F	762	775	Right-handed alpha
Helix 158	AR5	F	787	799	Right-handed alpha
Helix 159	AR6	F	809	826	Right-handed alpha
Helix 160	AR7	F	840	848	Right-handed alpha
Helix 161	AR8	F	859	872	Right-handed alpha

There are 18 sheets in PDB entry 9CBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	567	first strand
Strand 2	A	528	531	parallel
Strand 3	A	488	492	parallel
Strand 4	A	461	463	parallel
Strand 5	A	440	442	parallel
Strand 6	A	409	413	parallel
Strand 7	A	369	376	parallel
Strand 8	A	601	604	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	498	499	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	781	first strand
Strand 2	A	749	755	parallel
Strand 3	A	802	806	parallel
Strand 4	A	832	835	parallel
Strand 5	A	854	857	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	528	531	parallel
Strand 3	B	488	492	parallel
Strand 4	B	461	463	parallel
Strand 5	B	440	442	parallel
Strand 6	B	409	413	parallel
Strand 7	B	369	376	parallel
Strand 8	B	601	604	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	495	first strand
Strand 2	B	498	499	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	777	781	first strand
Strand 2	B	749	755	parallel
Strand 3	B	802	806	parallel
Strand 4	B	832	835	parallel
Strand 5	B	854	857	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	566	567	first strand
Strand 2	C	528	531	parallel
Strand 3	C	488	492	parallel
Strand 4	C	461	463	parallel
Strand 5	C	440	442	parallel
Strand 6	C	409	413	parallel
Strand 7	C	369	376	parallel
Strand 8	C	601	604	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	495	first strand
Strand 2	C	498	499	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	777	781	first strand
Strand 2	C	749	755	parallel
Strand 3	C	802	806	parallel
Strand 4	C	832	835	parallel
Strand 5	C	854	857	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	566	567	first strand
Strand 2	D	528	531	parallel
Strand 3	D	488	492	parallel
Strand 4	D	461	463	parallel
Strand 5	D	440	442	parallel
Strand 6	D	409	413	parallel
Strand 7	D	369	376	parallel
Strand 8	D	601	604	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	498	499	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	777	781	first strand
Strand 2	D	749	755	parallel
Strand 3	D	802	806	parallel
Strand 4	D	832	835	parallel
Strand 5	D	854	857	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	567	first strand
Strand 2	E	528	531	parallel
Strand 3	E	488	492	parallel
Strand 4	E	461	463	parallel
Strand 5	E	440	442	parallel
Strand 6	E	409	413	parallel
Strand 7	E	369	376	parallel
Strand 8	E	601	604	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	495	first strand
Strand 2	E	498	499	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	777	781	first strand
Strand 2	E	749	755	parallel
Strand 3	E	802	806	parallel
Strand 4	E	832	835	parallel
Strand 5	E	854	857	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	566	567	first strand
Strand 2	F	528	532	parallel
Strand 3	F	488	492	parallel
Strand 4	F	461	463	parallel
Strand 5	F	440	442	parallel
Strand 6	F	409	413	parallel
Strand 7	F	369	376	parallel
Strand 8	F	601	604	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	495	first strand
Strand 2	F	498	499	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	777	781	first strand
Strand 2	F	749	755	parallel
Strand 3	F	802	806	parallel
Strand 4	F	832	835	parallel
Strand 5	F	854	857	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBO