Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CBP entry

There is 1 chain in PDB entry 9CBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9CBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
39 48Right-handed alpha
Helix 4
AA4
A
56 62Right-handed alpha
Helix 5
AA5
A
66 71Right-handed 310
Helix 6
AA6
A
72 76Right-handed 310
Helix 7
AA7
A
78 80Right-handed 310
Helix 8
AA8
A
81 86Right-handed alpha
Helix 9
AA9
A
86 100Right-handed alpha
Helix 10
AB1
A
113 118Right-handed alpha
Helix 11
AB2
A
119 121Right-handed 310
Helix 12
AB3
A
122 124Right-handed 310
Helix 13
AB4
A
125 142Right-handed alpha
Helix 14
AB5
A
158 162Right-handed 310
Helix 15
AB6
A
165 183Right-handed alpha
Helix 16
AB7
A
195 214Right-handed alpha
Helix 17
AB8
A
236 246Right-handed alpha
Helix 18
AB9
A
259 274Right-handed alpha
Helix 19
AC1
A
299 313Right-handed alpha
Helix 20
AC2
A
326 338Right-handed alpha
Helix 21
AC3
A
380 390Right-handed alpha
Helix 22
AC4
A
391 405Right-handed alpha
Helix 23
AC5
A
420 436Right-handed alpha
Helix 24
AC6
A
446 454Right-handed alpha
Helix 25
AC7
A
471 486Right-handed alpha
Helix 26
AC8
A
502 519Right-handed alpha
Helix 27
AC9
A
524 526Right-handed 310
Helix 28
AD1
A
546 562Right-handed alpha
Helix 29
AD2
A
572 576Right-handed 310
Helix 30
AD3
A
579 597Right-handed alpha
Helix 31
AD4
A
605 609Right-handed 310
Helix 32
AD5
A
611 615Right-handed 310
Helix 33
AD6
A
616 628Right-handed alpha
Helix 34
AD7
A
636 647Right-handed alpha
Helix 35
AD8
A
650 661Right-handed alpha
Helix 36
AD9
A
663 674Right-handed alpha
Helix 37
AE1
A
679 690Right-handed alpha
Helix 38
AE2
A
693 700Right-handed alpha
Helix 39
AE3
A
700 715Right-handed alpha
Helix 40
AE4
A
719 738Right-handed alpha
Helix 41
AE5
A
762 774Right-handed alpha
Helix 42
AE6
A
787 799Right-handed alpha
Helix 43
AE7
A
809 826Right-handed alpha
Helix 44
AE8
A
840 848Right-handed alpha
Helix 45
AE9
A
859 871Right-handed alpha
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There are 6 sheets in PDB entry 9CBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
29 30anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
318 319parallel
Strand 3
A
277 281parallel
Strand 4
A
251 255parallel
Strand 5
A
219 223parallel
Strand 6
A
187 193parallel
Strand 7
A
147 152parallel
Strand 8
A
104 106parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
359 361anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 376first strand
Strand 2
A
409 413parallel
Strand 3
A
440 443parallel
Strand 4
A
462 466parallel
Strand 5
A
488 492parallel
Strand 6
A
528 531parallel
Strand 7
A
566 570parallel
Strand 8
A
601 603parallel
Strand 9
A
369 376parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
498 499anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 781first strand
Strand 2
A
750 755parallel
Strand 3
A
802 806parallel
Strand 4
A
832 835parallel
Strand 5
A
854 857parallel
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