Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CBQ entry

There is 1 chain in PDB entry 9CBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 367HIS 873
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9CBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
380 389Right-handed alpha
Helix 2
AA2
A
391 405Right-handed alpha
Helix 3
AA3
A
420 436Right-handed alpha
Helix 4
AA4
A
446 457Right-handed alpha
Helix 5
AA5
A
470 485Right-handed alpha
Helix 6
AA6
A
502 520Right-handed alpha
Helix 7
AA7
A
524 526Right-handed 310
Helix 8
AA8
A
546 562Right-handed alpha
Helix 9
AA9
A
570 576Right-handed 310
Helix 10
AB1
A
579 596Right-handed alpha
Helix 11
AB2
A
611 615Right-handed 310
Helix 12
AB3
A
616 628Right-handed alpha
Helix 13
AB4
A
636 644Right-handed alpha
Helix 14
AB5
A
652 662Right-handed alpha
Helix 15
AB6
A
663 675Right-handed alpha
Helix 16
AB7
A
679 689Right-handed alpha
Helix 17
AB8
A
693 700Right-handed alpha
Helix 18
AB9
A
700 716Right-handed alpha
Helix 19
AC1
A
719 738Right-handed alpha
Helix 20
AC2
A
762 774Right-handed alpha
Helix 21
AC3
A
787 799Right-handed alpha
Helix 22
AC4
A
809 826Right-handed alpha
Helix 23
AC5
A
840 849Right-handed alpha
Helix 24
AC6
A
859 870Right-handed alpha
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There are 3 sheets in PDB entry 9CBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
528 531parallel
Strand 3
A
488 492parallel
Strand 4
A
461 464parallel
Strand 5
A
440 443parallel
Strand 6
A
409 412parallel
Strand 7
A
369 372parallel
Strand 8
A
601 604parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
498 499anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 781first strand
Strand 2
A
750 755parallel
Strand 3
A
802 806parallel
Strand 4
A
832 834parallel
Strand 5
A
854 856parallel
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