Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CBR entry

There is 1 chain in PDB entry 9CBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 872
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9CBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 39Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
66 71Right-handed 310
Helix 5
AA5
A
72 76Right-handed 310
Helix 6
AA6
A
81 86Right-handed alpha
Helix 7
AA7
A
86 99Right-handed alpha
Helix 8
AA8
A
113 118Right-handed alpha
Helix 9
AA9
A
119 121Right-handed 310
Helix 10
AB1
A
125 145Right-handed alpha
Helix 11
AB2
A
165 183Right-handed alpha
Helix 12
AB3
A
195 214Right-handed alpha
Helix 13
AB4
A
236 245Right-handed alpha
Helix 14
AB5
A
259 274Right-handed alpha
Helix 15
AB6
A
299 313Right-handed alpha
Helix 16
AB7
A
326 338Right-handed alpha
Helix 17
AB8
A
380 389Right-handed alpha
Helix 18
AB9
A
391 404Right-handed alpha
Helix 19
AC1
A
420 436Right-handed alpha
Helix 20
AC2
A
446 455Right-handed alpha
Helix 21
AC3
A
471 486Right-handed alpha
Helix 22
AC4
A
502 520Right-handed alpha
Helix 23
AC5
A
524 526Right-handed 310
Helix 24
AC6
A
546 562Right-handed alpha
Helix 25
AC7
A
570 574Right-handed 310
Helix 26
AC8
A
579 598Right-handed alpha
Helix 27
AC9
A
605 609Right-handed 310
Helix 28
AD1
A
611 615Right-handed 310
Helix 29
AD2
A
616 628Right-handed alpha
Helix 30
AD3
A
636 648Right-handed alpha
Helix 31
AD4
A
663 675Right-handed alpha
Helix 32
AD5
A
679 690Right-handed alpha
Helix 33
AD6
A
693 700Right-handed alpha
Helix 34
AD7
A
700 715Right-handed alpha
Helix 35
AD8
A
719 738Right-handed alpha
Helix 36
AD9
A
739 741Right-handed 310
Helix 37
AE1
A
762 775Right-handed alpha
Helix 38
AE2
A
787 799Right-handed alpha
Helix 39
AE3
A
809 826Right-handed alpha
Helix 40
AE4
A
840 848Right-handed alpha
Helix 41
AE5
A
859 872Right-handed alpha
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There are 7 sheets in PDB entry 9CBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
29 30anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
147 152parallel
Strand 3
A
187 193parallel
Strand 4
A
219 223parallel
Strand 5
A
251 256parallel
Strand 6
A
277 282parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
293 295anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
359 361anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 568first strand
Strand 2
A
528 531parallel
Strand 3
A
488 492parallel
Strand 4
A
462 466parallel
Strand 5
A
440 443parallel
Strand 6
A
409 413parallel
Strand 7
A
369 376parallel
Strand 8
A
601 604parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
498 499anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 781first strand
Strand 2
A
750 755parallel
Strand 3
A
802 806parallel
Strand 4
A
832 834parallel
Strand 5
A
854 856parallel
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