Analysis of interatomic Contacts of Structural Units in PDB entry:
9CBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CBZ entry

There are 4 chains in PDB entry 9CBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 40PRO 527
C
 ASP 40PRO 527
D
 ASP 40PRO 527
A
 ASP 40PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 9CBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
41 49Right-handed alpha
Helix 2
AA2
B
51 60Right-handed alpha
Helix 3
AA3
B
63 106Right-handed alpha
Helix 4
AA4
B
121 138Right-handed alpha
Helix 5
AA5
B
138 143Right-handed alpha
Helix 6
AA6
B
176 179Right-handed 310
Helix 7
AA7
B
217 221Right-handed 310
Helix 8
AA8
B
242 248Right-handed 310
Helix 9
AA9
B
295 338Right-handed alpha
Helix 10
AB1
B
345 351Right-handed alpha
Helix 11
AB2
B
352 377Right-handed alpha
Helix 12
AB3
B
382 401Right-handed alpha
Helix 13
AB4
B
402 406Right-handed 310
Helix 14
AB5
B
408 411Right-handed 310
Helix 15
AB6
B
412 447Right-handed alpha
Helix 16
AB7
B
451 455Right-handed 310
Helix 17
AB8
B
456 469Right-handed alpha
Helix 18
AB9
B
472 482Right-handed alpha
Helix 19
AC1
B
483 486Right-handed 310
Helix 20
AC2
B
487 507Right-handed alpha
Helix 21
AC3
B
508 524Right-handed alpha
Helix 22
AC4
C
41 49Right-handed alpha
Helix 23
AC5
C
51 60Right-handed alpha
Helix 24
AC6
C
63 106Right-handed alpha
Helix 25
AC7
C
121 138Right-handed alpha
Helix 26
AC8
C
138 143Right-handed alpha
Helix 27
AC9
C
176 179Right-handed 310
Helix 28
AD1
C
217 221Right-handed 310
Helix 29
AD2
C
242 248Right-handed 310
Helix 30
AD3
C
295 338Right-handed alpha
Helix 31
AD4
C
345 351Right-handed alpha
Helix 32
AD5
C
352 377Right-handed alpha
Helix 33
AD6
C
382 401Right-handed alpha
Helix 34
AD7
C
402 406Right-handed 310
Helix 35
AD8
C
408 411Right-handed 310
Helix 36
AD9
C
412 447Right-handed alpha
Helix 37
AE1
C
451 455Right-handed 310
Helix 38
AE2
C
456 469Right-handed alpha
Helix 39
AE3
C
472 482Right-handed alpha
Helix 40
AE4
C
483 486Right-handed 310
Helix 41
AE5
C
487 507Right-handed alpha
Helix 42
AE6
C
508 524Right-handed alpha
Helix 43
AE7
D
41 49Right-handed alpha
Helix 44
AE8
D
51 60Right-handed alpha
Helix 45
AE9
D
63 106Right-handed alpha
Helix 46
AF1
D
121 138Right-handed alpha
Helix 47
AF2
D
138 143Right-handed alpha
Helix 48
AF3
D
176 179Right-handed 310
Helix 49
AF4
D
217 221Right-handed 310
Helix 50
AF5
D
242 248Right-handed 310
Helix 51
AF6
D
295 338Right-handed alpha
Helix 52
AF7
D
345 351Right-handed alpha
Helix 53
AF8
D
352 377Right-handed alpha
Helix 54
AF9
D
382 401Right-handed alpha
Helix 55
AG1
D
402 406Right-handed 310
Helix 56
AG2
D
408 411Right-handed 310
Helix 57
AG3
D
412 447Right-handed alpha
Helix 58
AG4
D
451 455Right-handed 310
Helix 59
AG5
D
456 469Right-handed alpha
Helix 60
AG6
D
472 482Right-handed alpha
Helix 61
AG7
D
483 486Right-handed 310
Helix 62
AG8
D
487 507Right-handed alpha
Helix 63
AG9
D
508 524Right-handed alpha
Helix 64
AH1
A
41 49Right-handed alpha
Helix 65
AH2
A
51 60Right-handed alpha
Helix 66
AH3
A
63 106Right-handed alpha
Helix 67
AH4
A
121 138Right-handed alpha
Helix 68
AH5
A
138 143Right-handed alpha
Helix 69
AH6
A
176 179Right-handed 310
Helix 70
AH7
A
217 221Right-handed 310
Helix 71
AH8
A
242 248Right-handed 310
Helix 72
AH9
A
295 338Right-handed alpha
Helix 73
AI1
A
345 351Right-handed alpha
Helix 74
AI2
A
352 377Right-handed alpha
Helix 75
AI3
A
382 401Right-handed alpha
Helix 76
AI4
A
402 406Right-handed 310
Helix 77
AI5
A
408 411Right-handed 310
Helix 78
AI6
A
412 447Right-handed alpha
Helix 79
AI7
A
451 455Right-handed 310
Helix 80
AI8
A
456 469Right-handed alpha
Helix 81
AI9
A
472 482Right-handed alpha
Helix 82
AJ1
A
483 486Right-handed 310
Helix 83
AJ2
A
487 507Right-handed alpha
Helix 84
AJ3
A
508 524Right-handed alpha
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There are 8 sheets in PDB entry 9CBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
271 282anti-parallel
Strand 3
B
253 263anti-parallel
Strand 4
B
228 240anti-parallel
Strand 5
B
148 149anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
271 282anti-parallel
Strand 3
B
253 263anti-parallel
Strand 4
B
228 240anti-parallel
Strand 5
B
163 173anti-parallel
Strand 6
B
181 195anti-parallel
Strand 7
A
286 289parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 289first strand
Strand 2
C
181 195parallel
Strand 3
C
163 173anti-parallel
Strand 4
C
228 240anti-parallel
Strand 5
C
253 263anti-parallel
Strand 6
C
271 282anti-parallel
Strand 7
C
118 119anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 289first strand
Strand 2
C
181 195parallel
Strand 3
C
163 173anti-parallel
Strand 4
C
228 240anti-parallel
Strand 5
C
148 149anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 289first strand
Strand 2
D
181 195parallel
Strand 3
D
163 173anti-parallel
Strand 4
D
228 240anti-parallel
Strand 5
D
253 263anti-parallel
Strand 6
D
271 282anti-parallel
Strand 7
D
118 119anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 289first strand
Strand 2
D
181 195parallel
Strand 3
D
163 173anti-parallel
Strand 4
D
228 240anti-parallel
Strand 5
D
148 149anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
286 289first strand
Strand 2
A
181 195parallel
Strand 3
A
163 173anti-parallel
Strand 4
A
228 240anti-parallel
Strand 5
A
253 263anti-parallel
Strand 6
A
271 282anti-parallel
Strand 7
A
118 119anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
286 289first strand
Strand 2
A
181 195parallel
Strand 3
A
163 173anti-parallel
Strand 4
A
228 240anti-parallel
Strand 5
A
148 149anti-parallel
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