Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CCB entry

There is 1 chain in PDB entry 9CCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3GLU 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9CCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
57 63Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
77 85Right-handed alpha
Helix 6
AA6
A
98 107Right-handed alpha
Helix 7
AA7
A
111 115Right-handed 310
Helix 8
AA8
A
146 150Right-handed 310
Helix 9
AA9
A
173 178Right-handed alpha
Helix 10
AB1
A
186 201Right-handed alpha
Helix 11
AB2
A
211 215Right-handed 310
Helix 12
AB3
A
224 240Right-handed alpha
Helix 13
AB4
A
255 266Right-handed alpha
Helix 14
AB5
A
278 285Right-handed alpha
Helix 15
AB6
A
290 304Right-handed alpha
Helix 16
AB7
A
320 335Right-handed alpha
Helix 17
AB8
A
350 358Right-handed alpha
Helix 18
AB9
A
377 394Right-handed alpha
Helix 19
AC1
A
401 427Right-handed alpha
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There are 4 sheets in PDB entry 9CCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
4 8parallel
Strand 3
A
43 47parallel
Strand 4
A
67 71parallel
Strand 5
A
89 91parallel
Strand 6
A
118 122anti-parallel
Strand 7
A
125 128anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
205 208parallel
Strand 3
A
244 245parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
183 184anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
307 314parallel
Strand 3
A
338 343parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il