Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CCF entry

There are 2 chains in PDB entry 9CCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5ALA 1198
B
 LEU 5ALA 1198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9CCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1006 1026Right-handed alpha
Helix 2
AA2
A
1028 1052Right-handed alpha
Helix 3
AA3
A
1054 1077Right-handed alpha
Helix 4
AA4
A
1079 1096Right-handed alpha
Helix 5
AA5
A
1100 1123Right-handed alpha
Helix 6
AA6
A
1130 1140Right-handed alpha
Helix 7
AA7
A
1141 1144Right-handed 310
Helix 8
AA8
A
1145 1163Right-handed alpha
Helix 9
AA9
A
1164 1164Right-handed 310
Helix 10
AB1
A
1168 1169Right-handed 310
Helix 11
AB2
A
1170 1180Right-handed alpha
Helix 12
AB3
A
1183 1198Right-handed alpha
Helix 13
AB4
B
1008 1026Right-handed alpha
Helix 14
AB5
B
1028 1052Right-handed alpha
Helix 15
AB6
B
1054 1077Right-handed alpha
Helix 16
AB7
B
1079 1095Right-handed alpha
Helix 17
AB8
B
1100 1123Right-handed alpha
Helix 18
AB9
B
1128 1140Right-handed alpha
Helix 19
AC1
B
1145 1164Right-handed alpha
Helix 20
AC2
B
1169 1180Right-handed alpha
Helix 21
AC3
B
1183 1196Right-handed alpha
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There are no sheets in PDB entry 9CCF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il