Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CCG entry

There are 6 chains in PDB entry 9CCG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	MET 693
B	GLU 4	PRO 230
C	GLN 4	CYS 215
D	LEU 23	PHE 697
E	GLN 4	CYS 215
F	GLU 4	PRO 230

There are 32 helices in PDB entry 9CCG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	45	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	134	141	Right-handed alpha
Helix 5	AA5	A	151	164	Right-handed alpha
Helix 6	AA6	A	205	213	Right-handed alpha
Helix 7	AA7	A	222	240	Right-handed alpha
Helix 8	AA8	A	285	290	Right-handed alpha
Helix 9	AA9	A	294	300	Right-handed alpha
Helix 10	AB1	A	311	326	Right-handed alpha
Helix 11	AB2	A	383	385	Right-handed 310
Helix 12	AB3	B	90	94	Right-handed 310
Helix 13	AB4	C	80	84	Right-handed 310
Helix 14	AB5	C	122	127	Right-handed alpha
Helix 15	AB6	C	184	190	Right-handed alpha
Helix 16	AB7	C	199	203	Right-handed 310
Helix 17	AB8	D	37	45	Right-handed alpha
Helix 18	AB9	D	54	69	Right-handed alpha
Helix 19	AC1	D	97	101	Right-handed 310
Helix 20	AC2	D	134	141	Right-handed alpha
Helix 21	AC3	D	151	164	Right-handed alpha
Helix 22	AC4	D	205	213	Right-handed alpha
Helix 23	AC5	D	222	240	Right-handed alpha
Helix 24	AC6	D	285	290	Right-handed alpha
Helix 25	AC7	D	294	300	Right-handed alpha
Helix 26	AC8	D	311	326	Right-handed alpha
Helix 27	AC9	D	383	385	Right-handed 310
Helix 28	AD1	E	80	84	Right-handed 310
Helix 29	AD2	E	122	127	Right-handed alpha
Helix 30	AD3	E	184	190	Right-handed alpha
Helix 31	AD4	E	199	203	Right-handed 310
Helix 32	AD5	F	90	94	Right-handed 310

There are 40 sheets in PDB entry 9CCG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	81	first strand
Strand 2	A	84	92	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	173	first strand
Strand 2	A	184	189	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	180	181	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	257	261	parallel
Strand 3	A	250	252	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	341	345	parallel
Strand 3	A	337	338	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	348	353	parallel
Strand 3	A	328	334	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	382	first strand
Strand 2	A	387	395	anti-parallel
Strand 3	A	374	376	anti-parallel
Strand 4	A	359	365	anti-parallel
Strand 5	D	359	365	anti-parallel
Strand 6	D	374	376	anti-parallel
Strand 7	D	387	395	anti-parallel
Strand 8	D	379	382	anti-parallel

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There are 32 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	692	first strand
Strand 2	A	668	678	anti-parallel
Strand 3	A	654	665	anti-parallel
Strand 4	A	623	633	anti-parallel
Strand 5	A	605	615	anti-parallel
Strand 6	A	564	575	anti-parallel
Strand 7	A	544	558	anti-parallel
Strand 8	A	526	538	anti-parallel
Strand 9	A	502	515	anti-parallel
Strand 10	A	457	471	anti-parallel
Strand 11	A	439	452	anti-parallel
Strand 12	A	420	427	anti-parallel
Strand 13	A	401	409	anti-parallel
Strand 14	A	387	395	anti-parallel
Strand 15	A	374	376	anti-parallel
Strand 16	A	359	365	anti-parallel
Strand 17	D	359	365	anti-parallel
Strand 18	D	374	376	anti-parallel
Strand 19	D	387	395	anti-parallel
Strand 20	D	401	409	anti-parallel
Strand 21	D	420	427	anti-parallel
Strand 22	D	439	452	anti-parallel
Strand 23	D	457	471	anti-parallel
Strand 24	D	502	515	anti-parallel
Strand 25	D	526	538	anti-parallel
Strand 26	D	544	558	anti-parallel
Strand 27	D	564	575	anti-parallel
Strand 28	D	605	615	anti-parallel
Strand 29	D	623	633	anti-parallel
Strand 30	D	654	665	anti-parallel
Strand 31	D	668	678	anti-parallel
Strand 32	D	690	692	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	485	488	anti-parallel
Strand 3	A	493	496	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	601	603	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	20	27	anti-parallel
Strand 3	B	81	87	anti-parallel
Strand 4	B	73	76	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	48	55	anti-parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	95	102	anti-parallel
Strand 5	B	117	120	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	48	55	anti-parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	95	102	anti-parallel
Strand 5	B	124	126	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	199	201	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	192	195	anti-parallel
Strand 3	B	186	188	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	222	228	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	71	74	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	90	93	anti-parallel
Strand 3	C	96	99	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	86	87	anti-parallel
Strand 3	C	103	104	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	182	183	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	177	179	anti-parallel
Strand 3	C	161	163	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	81	first strand
Strand 2	D	84	92	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	173	first strand
Strand 2	D	184	189	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	180	181	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	199	first strand
Strand 2	D	257	261	parallel
Strand 3	D	250	252	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	341	345	parallel
Strand 3	D	337	338	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	348	353	parallel
Strand 3	D	328	334	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	479	first strand
Strand 2	D	485	488	anti-parallel
Strand 3	D	493	496	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	587	first strand
Strand 2	D	601	603	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	90	93	anti-parallel
Strand 3	E	96	99	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	86	87	anti-parallel
Strand 3	E	103	104	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	182	183	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	136	first strand
Strand 2	E	177	179	anti-parallel
Strand 3	E	161	163	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	10	first strand
Strand 2	F	20	27	anti-parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	73	76	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	38	42	anti-parallel
Strand 4	F	95	102	anti-parallel
Strand 5	F	117	120	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	38	42	anti-parallel
Strand 4	F	95	102	anti-parallel
Strand 5	F	124	126	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	199	201	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	192	195	anti-parallel
Strand 3	F	186	188	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	171	first strand
Strand 2	F	211	217	anti-parallel
Strand 3	F	222	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CCG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCG