Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CCS entry

There are 3 chains in PDB entry 9CCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1GLY 159
B
 GLN 6GLU 219
C
 GLU 6CYS 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 9CCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 40Right-handed 310
Helix 2
AA2
A
65 70Right-handed alpha
Helix 3
AA3
B
35 37Right-handed 310
Helix 4
AA4
B
85 89Right-handed 310
Helix 5
AA5
B
127 133Right-handed alpha
Helix 6
AA6
B
188 195Right-handed alpha
Helix 7
AA7
B
203 207Right-handed 310
Helix 8
AA8
C
92 96Right-handed 310
Helix 9
AA9
C
213 217Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 9CCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
42 45anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 22first strand
Strand 2
A
142 150parallel
Strand 3
A
125 135anti-parallel
Strand 4
A
54 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
105 111anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
28 30anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
108 110parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
50 55anti-parallel
Strand 6
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
137 145anti-parallel
Strand 3
B
179 186anti-parallel
Strand 4
B
166 169anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
197 201anti-parallel
Strand 3
B
212 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
26 28anti-parallel
Strand 3
C
83 87anti-parallel
Strand 4
C
74 75anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
120 123parallel
Strand 3
C
98 102anti-parallel
Strand 4
C
40 44anti-parallel
Strand 5
C
50 56anti-parallel
Strand 6
C
63 65anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 158first strand
Strand 2
C
189 195anti-parallel
Strand 3
C
182 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 167first strand
Strand 2
C
207 210anti-parallel
Strand 3
C
221 224anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il