Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CCT entry

There are 3 chains in PDB entry 9CCT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1GLY 159
B
 GLN 6GLU 219
C
 GLU 6CYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9CCT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 71Right-handed alpha
Helix 2
AA2
B
35 37Right-handed 310
Helix 3
AA3
B
85 89Right-handed 310
Helix 4
AA4
B
127 133Right-handed alpha
Helix 5
AA5
B
188 193Right-handed alpha
Helix 6
AA6
C
33 37Right-handed 310
Helix 7
AA7
C
92 96Right-handed 310
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There are 16 sheets in PDB entry 9CCT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
3 5anti-parallel
Strand 3
A
42 44anti-parallel
Strand 4
A
101 102anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 22first strand
Strand 2
A
142 150parallel
Strand 3
A
125 135anti-parallel
Strand 4
A
54 63anti-parallel
Strand 5
A
93 95anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
80 84anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
154 155anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
74 77anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
80 81anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
39 44anti-parallel
Strand 4
B
91 96anti-parallel
Strand 5
B
108 109anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
138 145anti-parallel
Strand 3
B
179 185anti-parallel
Strand 4
B
166 169anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 156first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
211 215anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
27 30anti-parallel
Strand 3
C
83 88anti-parallel
Strand 4
C
23 24anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
27 30anti-parallel
Strand 3
C
83 88anti-parallel
Strand 4
C
73 77anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
118 122parallel
Strand 3
C
97 104anti-parallel
Strand 4
C
39 44anti-parallel
Strand 5
C
51 56anti-parallel
Strand 6
C
63 65anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
118 122parallel
Strand 3
C
97 104anti-parallel
Strand 4
C
111 113anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
187 196anti-parallel
Strand 4
C
174 176anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
187 196anti-parallel
Strand 4
C
180 181anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 165first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
216 221anti-parallel
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