Analysis of interatomic Contacts of Structural Units in PDB entry:
9CCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CCV entry

There are 2 chains in PDB entry 9CCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4PHE 135
B
 LYS 398ASN 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 9CCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
118 134Right-handed alpha
Helix 4
AA4
B
456 460Right-handed 310
Helix 5
AA5
B
461 467Right-handed alpha
Helix 6
AA6
B
479 493Right-handed alpha
Helix 7
AA7
B
529 542Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9CCV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 80first strand
Strand 2
A
18 30anti-parallel
Strand 3
A
6 15anti-parallel
Strand 4
A
86 97anti-parallel
Strand 5
A
44 51anti-parallel
Strand 6
A
54 61anti-parallel
Strand 7
A
110 115parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 409first strand
Strand 2
B
424 433anti-parallel
Strand 3
B
468 475anti-parallel
Strand 4
B
521 527anti-parallel
Strand 5
B
510 516anti-parallel
Strand 6
B
494 499anti-parallel
Strand 7
B
447 454anti-parallel
Strand 8
B
399 409parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il