Analysis of interatomic Contacts of Structural Units in PDB entry:
9CD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CD3 entry

There are 2 chains in PDB entry 9CD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15PHE 799
B
 SER 15PHE 799
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9CD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 39Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
64 85Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
100 111Right-handed alpha
Helix 6
AA6
A
112 118Right-handed alpha
Helix 7
AA7
A
119 122Right-handed 310
Helix 8
AA8
A
124 134Right-handed alpha
Helix 9
AA9
A
161 170Right-handed alpha
Helix 10
AB1
A
185 188Right-handed 310
Helix 11
AB2
A
189 196Right-handed alpha
Helix 12
AB3
A
197 201Right-handed 310
Helix 13
AB4
A
225 230Right-handed alpha
Helix 14
AB5
A
231 242Right-handed alpha
Helix 15
AB6
A
256 279Right-handed alpha
Helix 16
AB7
A
311 315Right-handed 310
Helix 17
AB8
A
325 338Right-handed alpha
Helix 18
AB9
A
339 343Right-handed 310
Helix 19
AC1
A
355 359Right-handed 310
Helix 20
AC2
A
396 412Right-handed alpha
Helix 21
AC3
A
429 435Right-handed 310
Helix 22
AC4
A
462 477Right-handed alpha
Helix 23
AC5
A
488 491Right-handed 310
Helix 24
AC6
A
492 507Right-handed alpha
Helix 25
AC7
A
525 529Right-handed 310
Helix 26
AC8
A
540 546Right-handed alpha
Helix 27
AC9
A
560 572Right-handed alpha
Helix 28
AD1
A
593 602Right-handed alpha
Helix 29
AD2
A
637 655Right-handed alpha
Helix 30
AD3
A
681 689Right-handed alpha
Helix 31
AD4
A
702 711Right-handed alpha
Helix 32
AD5
A
715 717Right-handed 310
Helix 33
AD6
A
732 740Right-handed alpha
Helix 34
AD7
A
743 756Right-handed alpha
Helix 35
AD8
A
762 784Right-handed alpha
Helix 36
AD9
A
787 792Right-handed alpha
Helix 37
AE1
B
16 39Right-handed alpha
Helix 38
AE2
B
50 54Right-handed 310
Helix 39
AE3
B
64 85Right-handed alpha
Helix 40
AE4
B
97 99Right-handed 310
Helix 41
AE5
B
100 111Right-handed alpha
Helix 42
AE6
B
113 117Right-handed 310
Helix 43
AE7
B
118 122Right-handed 310
Helix 44
AE8
B
124 134Right-handed alpha
Helix 45
AE9
B
162 170Right-handed alpha
Helix 46
AF1
B
185 188Right-handed 310
Helix 47
AF2
B
189 196Right-handed alpha
Helix 48
AF3
B
197 201Right-handed 310
Helix 49
AF4
B
225 230Right-handed alpha
Helix 50
AF5
B
231 242Right-handed alpha
Helix 51
AF6
B
255 276Right-handed alpha
Helix 52
AF7
B
311 315Right-handed 310
Helix 53
AF8
B
325 338Right-handed alpha
Helix 54
AF9
B
339 343Right-handed 310
Helix 55
AG1
B
354 360Right-handed alpha
Helix 56
AG2
B
366 370Right-handed 310
Helix 57
AG3
B
396 412Right-handed alpha
Helix 58
AG4
B
429 435Right-handed 310
Helix 59
AG5
B
462 477Right-handed alpha
Helix 60
AG6
B
488 491Right-handed 310
Helix 61
AG7
B
492 507Right-handed alpha
Helix 62
AG8
B
525 529Right-handed 310
Helix 63
AG9
B
533 537Right-handed 310
Helix 64
AH1
B
540 546Right-handed alpha
Helix 65
AH2
B
560 572Right-handed alpha
Helix 66
AH3
B
596 602Right-handed alpha
Helix 67
AH4
B
637 655Right-handed alpha
Helix 68
AH5
B
681 689Right-handed alpha
Helix 69
AH6
B
703 711Right-handed alpha
Helix 70
AH7
B
715 717Right-handed 310
Helix 71
AH8
B
732 740Right-handed alpha
Helix 72
AH9
B
743 755Right-handed alpha
Helix 73
AI1
B
761 784Right-handed alpha
Helix 74
AI2
B
787 792Right-handed alpha
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There are 10 sheets in PDB entry 9CD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
176 183parallel
Strand 3
A
209 216parallel
Strand 4
A
286 292parallel
Strand 5
A
244 250parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
351 352anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
418 420parallel
Strand 3
A
481 485parallel
Strand 4
A
518 523parallel
Strand 5
A
578 582parallel
Strand 6
A
554 556parallel
Strand 7
A
667 669anti-parallel
Strand 8
A
672 673anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
451 452parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 617first strand
Strand 2
A
606 610anti-parallel
Strand 3
A
660 665anti-parallel
Strand 4
A
631 636parallel
Strand 5
A
695 699parallel
Strand 6
A
719 722parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 95first strand
Strand 2
B
176 182parallel
Strand 3
B
209 214parallel
Strand 4
B
286 292parallel
Strand 5
B
244 250parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 346first strand
Strand 2
B
351 352anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 459first strand
Strand 2
B
418 420parallel
Strand 3
B
481 485parallel
Strand 4
B
518 523parallel
Strand 5
B
578 582parallel
Strand 6
B
554 556parallel
Strand 7
B
667 669anti-parallel
Strand 8
B
672 673anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 439first strand
Strand 2
B
451 452parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 617first strand
Strand 2
B
606 610anti-parallel
Strand 3
B
660 665anti-parallel
Strand 4
B
631 636parallel
Strand 5
B
695 702parallel
Strand 6
B
719 724parallel
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