Analysis of interatomic Contacts of Structural Units in PDB entry:
9CD4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CD4 entry

There are 2 chains in PDB entry 9CD4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 15	PHE 799
D	SER 15	PHE 799

There are 74 helices in PDB entry 9CD4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	15	38	Right-handed alpha
Helix 2	AA2	C	50	54	Right-handed 310
Helix 3	AA3	C	64	85	Right-handed alpha
Helix 4	AA4	C	97	99	Right-handed 310
Helix 5	AA5	C	100	110	Right-handed alpha
Helix 6	AA6	C	113	117	Right-handed 310
Helix 7	AA7	C	118	122	Right-handed 310
Helix 8	AA8	C	124	134	Right-handed alpha
Helix 9	AA9	C	162	169	Right-handed alpha
Helix 10	AB1	C	185	188	Right-handed 310
Helix 11	AB2	C	189	195	Right-handed alpha
Helix 12	AB3	C	196	201	Right-handed 310
Helix 13	AB4	C	225	230	Right-handed alpha
Helix 14	AB5	C	231	242	Right-handed alpha
Helix 15	AB6	C	256	277	Right-handed alpha
Helix 16	AB7	C	311	315	Right-handed 310
Helix 17	AB8	C	325	338	Right-handed alpha
Helix 18	AB9	C	339	343	Right-handed 310
Helix 19	AC1	C	354	360	Right-handed alpha
Helix 20	AC2	C	362	370	Right-handed 310
Helix 21	AC3	C	396	412	Right-handed alpha
Helix 22	AC4	C	429	435	Right-handed 310
Helix 23	AC5	C	462	477	Right-handed alpha
Helix 24	AC6	C	488	491	Right-handed 310
Helix 25	AC7	C	492	507	Right-handed alpha
Helix 26	AC8	C	525	529	Right-handed 310
Helix 27	AC9	C	540	548	Right-handed alpha
Helix 28	AD1	C	560	572	Right-handed alpha
Helix 29	AD2	C	593	603	Right-handed alpha
Helix 30	AD3	C	637	655	Right-handed alpha
Helix 31	AD4	C	683	689	Right-handed alpha
Helix 32	AD5	C	702	711	Right-handed alpha
Helix 33	AD6	C	732	740	Right-handed alpha
Helix 34	AD7	C	743	755	Right-handed alpha
Helix 35	AD8	C	762	784	Right-handed alpha
Helix 36	AD9	C	787	792	Right-handed alpha
Helix 37	AE1	D	16	38	Right-handed alpha
Helix 38	AE2	D	50	54	Right-handed 310
Helix 39	AE3	D	64	85	Right-handed alpha
Helix 40	AE4	D	97	99	Right-handed 310
Helix 41	AE5	D	100	111	Right-handed alpha
Helix 42	AE6	D	112	118	Right-handed alpha
Helix 43	AE7	D	119	122	Right-handed 310
Helix 44	AE8	D	124	134	Right-handed alpha
Helix 45	AE9	D	162	170	Right-handed alpha
Helix 46	AF1	D	185	188	Right-handed 310
Helix 47	AF2	D	189	196	Right-handed alpha
Helix 48	AF3	D	197	201	Right-handed 310
Helix 49	AF4	D	225	230	Right-handed alpha
Helix 50	AF5	D	231	242	Right-handed alpha
Helix 51	AF6	D	255	276	Right-handed alpha
Helix 52	AF7	D	311	315	Right-handed 310
Helix 53	AF8	D	325	339	Right-handed alpha
Helix 54	AF9	D	340	344	Right-handed 310
Helix 55	AG1	D	354	359	Right-handed 310
Helix 56	AG2	D	366	370	Right-handed 310
Helix 57	AG3	D	396	412	Right-handed alpha
Helix 58	AG4	D	429	435	Right-handed 310
Helix 59	AG5	D	462	476	Right-handed alpha
Helix 60	AG6	D	488	491	Right-handed 310
Helix 61	AG7	D	492	508	Right-handed alpha
Helix 62	AG8	D	525	529	Right-handed 310
Helix 63	AG9	D	533	537	Right-handed 310
Helix 64	AH1	D	540	547	Right-handed alpha
Helix 65	AH2	D	560	572	Right-handed alpha
Helix 66	AH3	D	596	602	Right-handed alpha
Helix 67	AH4	D	619	623	Right-handed 310
Helix 68	AH5	D	637	655	Right-handed alpha
Helix 69	AH6	D	681	689	Right-handed alpha
Helix 70	AH7	D	702	711	Right-handed alpha
Helix 71	AH8	D	732	740	Right-handed alpha
Helix 72	AH9	D	743	756	Right-handed alpha
Helix 73	AI1	D	762	784	Right-handed alpha
Helix 74	AI2	D	787	792	Right-handed alpha

There are 12 sheets in PDB entry 9CD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	176	183	parallel
Strand 3	C	209	216	parallel
Strand 4	C	286	292	parallel
Strand 5	C	244	250	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	303	first strand
Strand 2	C	306	307	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	351	352	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	459	first strand
Strand 2	C	418	420	parallel
Strand 3	C	481	485	parallel
Strand 4	C	518	523	parallel
Strand 5	C	578	582	parallel
Strand 6	C	554	556	parallel
Strand 7	C	667	669	anti-parallel
Strand 8	C	672	673	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	439	first strand
Strand 2	C	451	452	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	617	first strand
Strand 2	C	606	610	anti-parallel
Strand 3	C	660	665	anti-parallel
Strand 4	C	631	636	parallel
Strand 5	C	695	699	parallel
Strand 6	C	719	722	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	176	182	parallel
Strand 3	D	209	214	parallel
Strand 4	D	286	292	parallel
Strand 5	D	244	250	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	303	first strand
Strand 2	D	306	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	395	first strand
Strand 2	D	588	589	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	459	first strand
Strand 2	D	418	420	parallel
Strand 3	D	481	485	parallel
Strand 4	D	518	523	parallel
Strand 5	D	578	583	parallel
Strand 6	D	554	556	parallel
Strand 7	D	667	669	anti-parallel
Strand 8	D	672	673	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	439	first strand
Strand 2	D	451	452	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	615	617	first strand
Strand 2	D	606	610	anti-parallel
Strand 3	D	660	665	anti-parallel
Strand 4	D	631	636	parallel
Strand 5	D	695	699	parallel
Strand 6	D	719	722	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CD4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CD4